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Detailed information on CNT30672441


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 4e-113

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641080Setaria viridisNymphaea colorata30.0626.0389.27233forward
CNT30515028Setaria viridisJuglans regia21.9420.0287.65170forward
CNT30698521Setaria viridisQuercus lobata34.5847.7784.33268forward
CNT30374620Setaria viridisArabidopsis thaliana31.7428.4186.59246forward
CNT3021108Setaria viridisCitrullus lanatus38.9718.3586.09302forward
CNT30402638Setaria viridisBeta vulgaris53.6832.4786.06416forward
CNT30524850Setaria viridisPhaseolus vulgaris30.3232.5587.23235forward
CNT30628634Setaria viridisVigna unguiculata36.2639.0386.12281forward
CNT30194995Setaria viridisPisum sativum26.9721.9584.69209forward
CNT30712616Setaria viridisGlycine max24.6523.4988.48191forward
CNT3090332Setaria viridisSolanum tuberosum23.8728.4688.65185forward
CNT30181754Setaria viridisSecale cereale3644.3688.17279forward
CNT30508545Setaria viridisSolanum lycopersicum23.143.2483.24179forward
CNT30172560Setaria viridisTrifolium pratense30.8435.185.36239forward
CNT30146819Setaria viridisMedicago truncatula36.5237.6884.45283forward
CNT3059692Setaria viridisArabidopsis lyrata8.3922.4992.3165forward
CNT3014998Setaria viridisZea mays51.2371.6691.18397forward
CNT30624603Setaria viridisDaucus carota38.4545.1586.58298forward
CNT30349162Setaria viridisEragrostis tef47.4840.492.66368forward
CNT30477100Setaria viridisArabidopsis halleri49.9497.9780.1387forward
CNT30620815Setaria viridisCajanus cajan22.8424.2185.88177forward
CNT30358838Setaria viridisLactuca sativa35.4840.282.55275forward
CNT30420528Setaria viridisPapaver somniferum40.5216.4784.08314forward
CNT30331991Setaria viridisDioscorea rotundata29.8148.8485.28231forward
CNT30116702Setaria viridisOryza nivara40.6530.6790.79315forward
CNT30594307Setaria viridisEragrostis curvula10.8423.9395.2484forward

Expression of CNT30672441

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVEMRTVW*

>peptide 2 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 3 (73 aa)
MRSTDDKATRWVKVEDGLLVKVLLRDDRLDDMLLEVSGNLIVGDCLVVLGRDEDSMVTSWGVLVSDPTRPQRTP

Sequence

>CNT30672441
CTCCTCTAGGTAAATAACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACA
ACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCAC
CTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGATCTCCTTGTCGGGG
ATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAG
CGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCGGAGAAAGCACCACCACCGTGGGCTCCCCA
GCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATG
GTCTTCTCGTCAAGGTACTGCTCAGGGATGACAGGCTTGATGACATGCTCCTTGAGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTGGG
TAGAGATGAGGACAGTATGGTAACAAGTTGGGGAGTGCTCGTCTCAGATCCGACCCGGCCGCAGCGCACGCCGAG