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Detailed information on CNT30367875


BLAST search results

BLAST vs Swiss-Prot:
sp|B0LXM0|METK_WHEAT, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673109Sorghum bicolorSetaria viridis28.7831.2796.64238forward
CNT30549907Sorghum bicolorIpomoea triloba20.1931.185.63167forward
CNT30373104Sorghum bicolorArabidopsis thaliana22.7322.4184.57188forward
CNT30266730Sorghum bicolorChenopodium quinoa25.7619.0288.73213forward
CNT30381356Sorghum bicolorManihot esculenta23.2265.9891.67192forward
CNT30712486Sorghum bicolorGlycine max23.2223.9786.46192forward
CNT3047443Sorghum bicolorPrunus dulcis24.4316.9387.62202forward
CNT30638840Sorghum bicolorCapsicum annuum20.5619.9187.06170forward
CNT30190465Sorghum bicolorSecale cereale22.1363.5491.8183forward
CNT3086108Sorghum bicolorVigna radiata22.3718.3986.49185forward
CNT30508429Sorghum bicolorSolanum lycopersicum11.4938.4685.2695forward
CNT30172560Sorghum bicolorTrifolium pratense25.6331.1384.43212forward
CNT30146819Sorghum bicolorMedicago truncatula20.1922.2486.83167forward
CNT30310308Sorghum bicolorCamelina sativa20.9274.8983.24173forward
CNT3059692Sorghum bicolorArabidopsis lyrata7.9822.8489.3966forward
CNT3013982Sorghum bicolorZea mays27.0977.2496.88224forward
CNT30349162Sorghum bicolorEragrostis tef27.3324.8195.13226forward
CNT30570759Sorghum bicolorVitis vinifera24.1835.5988200forward
CNT3055164Sorghum bicolorAmborella trichopoda25.5118.3584.36211forward
CNT30594307Sorghum bicolorEragrostis curvula10.6425.0793.1888forward
CNT30113329Sorghum bicolorFicus carica21.2816.3488.07176forward

Expression of CNT30367875

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MLLQVSSNLIIGDCLVVLGRDEDSVDTDGDHGTTLIAVLNCHLGLPDNLLVVDIGLGGDLTKDHDHVGLGAGLASNLAVRVLSKASVKNSI*

>peptide 2 (59 aa)
MTMLVLVQVSQATLLSGSSARQASRTASETWSQSLSGCPSFTDSEVKRKVSTAAIFSDLQ

>peptide 3 (77 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSFRSAAISSLVTVSSCWVEMRTVWTRMGTMAPPSLRYSTVTWVSLTIFS*

Sequence

>CNT30367875
TCTCAAAGTGGCTGTAGCCTGTAGCTTCTTTCATTGTTTTAAGCATTACATAACCAGTAAAACCAGAAATAATCCTCTAGGTAAATAAGCAGACACAATA
AGACCCTCACAAGTACCACTTATTAGGACAGTACAAGTACAAATGATAAGCAAGGGGCAGATCAAGAATCACAACATATAGAAGCCAGATAAAACATGAT
AAAGCGCAGCAGACCAAAAGCTTCTTCTGAAAAAGTGAGGGTGCCTTAGGCAGAAGGCTTCTCCGCCTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCA
GGGTCGTCCCTTCCAAAGTGGCCGTAGGCCGCCGTCTTGAGGTAGCGCCCGTTGCCACCTTTCTTGAGGTCCACCAATGACAAAGCGACCAGATGGGTTA
AGGTGGAAGATGGTCTTCTCATCAAGGTACTGCTCAGGGATGACAGGCTTGATGACATGCTCCTTCAGGTCAGCAGCAATCTCATCATTGGTGACTGTCT
CGTCGTGCTGGGTAGAGATGAGGACAGTGTGGACACGGATGGGGACCATGGCACCACCCTCATTGCGGTACTCAACTGTCACCTGGGTCTCCCTGACAAT
CTTCTCGTAGTCGACATTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTGGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCAGGGTCC
TCAGCAAGGCAAGCGTCAAGAACAGCATCTGAGACCTGGTCGCAGAGCTTGTCTGGGTGTCCCTCATTCACAGACTCCGAGGTGAAGAGGAAGGTGTCGA
CTGCGGCCATCTTCTCTGATCTGCAGC