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Detailed information on CNT30224132


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT003157, E-value = 2e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672978Hordeum vulgareSetaria viridis58.3151.4890.5400forward
CNT30521218Hordeum vulgareSetaria italica62.243590.16427forward
CNT30639730Hordeum vulgareNymphaea colorata49.2736.7884.32338forward
CNT30535563Hordeum vulgareEucalyptus grandis42.2735.5486.9290forward
CNT30316757Hordeum vulgareCorylus avellana42.7124.4687.71293forward
CNT30546678Hordeum vulgareIpomoea triloba60.793185.85417forward
CNT30518094Hordeum vulgareJuglans regia61.0844.7685.2419forward
CNT30618377Hordeum vulgareSesamum indicum38.0569.9787.74261forward
CNT3020462Hordeum vulgareCitrullus lanatus42.2725.8986.21290forward
CNT30194937Hordeum vulgarePisum sativum60.0641.2486.65412forward
CNT30712097Hordeum vulgareGlycine max41.423.8185.92284forward
CNT30160118Hordeum vulgarePistacia vera59.3343.1684.77407forward
CNT30121467Hordeum vulgarePhyscomitrium patens57.4359.4381.22394forward
CNT30387906Hordeum vulgareTriticum turgidum63.1244.6487.07433forward
CNT30564256Hordeum vulgareActinidia chinensis39.6523.3788.6272forward
CNT30541590Hordeum vulgareBrassica napus61.6636.3784.16423forward
CNT30233904Hordeum vulgareBrassica oleracea62.5446.7884.85429forward
CNT30173274Hordeum vulgareTrifolium pratense62.2431.7585.48427forward
CNT30146334Hordeum vulgareMedicago truncatula61.0842.1586.87419forward
CNT30246955Hordeum vulgareAvena sativa63.1224.5393.3433forward
CNT30665783Hordeum vulgareTriticum dicoccoides62.6847.291.63430forward
CNT30310418Hordeum vulgareCamelina sativa62.136.7284.51426forward
CNT3059230Hordeum vulgareArabidopsis lyrata62.5435.6984.62429forward
CNT3078925Hordeum vulgareBrassica juncea61.6636.1285.34423forward
CNT30611975Hordeum vulgareArabis alpina62.131.9182.86426forward
CNT30449969Hordeum vulgareSaccharum spontaneum62.6834.0788.37430forward
CNT30132437Hordeum vulgareLolium perenne62.6835.7786.98430forward
CNT3011166Hordeum vulgareZea mays62.2430.288.52427forward
CNT30228831Hordeum vulgareAnanas comosus15.1633.1293.27104forward
CNT30647369Hordeum vulgareRosa chinensis58.8944.5981.93404forward
CNT30203420Hordeum vulgareHelianthus annuus22.5930.8886.45155forward
CNT30684514Hordeum vulgareTriticum urartu60.9353.9495.69418forward
CNT30350895Hordeum vulgareEragrostis tef62.6838.0989.53430forward
CNT30368495Hordeum vulgareSorghum bicolor62.6842.288.84430forward
CNT30355697Hordeum vulgareLactuca sativa60.250.381.6413forward
CNT30423787Hordeum vulgarePapaver somniferum5720.9986.19391forward
CNT30706337Hordeum vulgarePrunus avium5733.5383.63391forward
CNT3024315Hordeum vulgarePopulus trichocarpa43.1538.7985.47296forward
CNT30148140Hordeum vulgareBrachypodium distachyon51.4692.8994.9353forward
CNT30101006Hordeum vulgareOryza rufipogon57.8757.0491.44397forward
CNT30580076Hordeum vulgareEchinochloa crusgalli35.2818.2991.74242forward
CNT30496962Hordeum vulgareDigitaria exilis63.1238.5289.61433forward
CNT30594462Hordeum vulgareEragrostis curvula59.1834.8889.9406forward
CNT30603788Hordeum vulgareOryza punctata63.1236.7692.15433forward
CNT30724026Hordeum vulgareLupinus angustifolius60.228.6883.29413forward
CNT3050518Hordeum vulgareCucumis sativus41.445.7382.39284forward

Expression of CNT30224132

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMMTWEVKLAASLAGSSLELDATNPRFRSFT

>peptide 2 (54 aa)
MTANKILQLDSAYFFLMAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGG*

>peptide 3 (53 aa)
MGLVGIIFTIPASPFLRNLGSASSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

Sequence

>CNT30224132
GCAAACCAAACCTCTGTAAATAAAAAACAGATAGACAGAAACATGCAACCATTTGGCAAAAGCAGCAGAAAAACAAGTGCAATCTAATAACTTGCATTTC
ACAACAAATCAGTCTCAGGGCACAGGAGTTTAGCAGAAGCAGGAATAGAAATACAGTAATTAAACGACAGACAGATCATTGCTCGCCCGGGATAAGAGTC
TGAAGCAACAAAAGCAATGACCGCGAACAAAATCCTTCAGCTAGATAGCGCCTATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCACCGGTGGGGTCC
TTCTTCTCCACGCCCTTGATGACACCGACAGCAACCGTTTGTCTCATGTCACGCACGGCAAAACGGCCAAGAGGAGGGTAGGTGGCAAAGGTCTCCACAA
CCATGGGCTTGGTGGGAATCATCTTCACGATACCAGCATCACCGTTCTTGAGGAACTTGGGCAGCGCCTCCAGCTCCTTACCAGATCGCCTGTCGATCTT
GGTCACCAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCATAGCCGTTGCCGATCTGACCAGGGTGGTTCATGATGATG
ACCTGGGAGGTGAAGTTGGCTGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGATGCAACAAACCCACGCTTCAGATCCTTCACGGC