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Detailed information on CNT30101006

BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 1e-79

BLAST vs NONCODE:
NONBNAT001751, E-value = 1e-90

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692364	Oryza rufipogon	Oryza sativa	75.86	46.89	94.7	528	forward
CNT30673332	Oryza rufipogon	Setaria viridis	57.33	47.84	92.73	399	forward
CNT30520996	Oryza rufipogon	Setaria italica	57.33	32.02	93.98	399	forward
CNT30639730	Oryza rufipogon	Nymphaea colorata	45.98	34.82	85	320	forward
CNT30546678	Oryza rufipogon	Ipomoea triloba	58.05	30.04	88.61	404	forward
CNT30377782	Oryza rufipogon	Arabidopsis thaliana	55.17	38.02	84.11	384	forward
CNT30618377	Oryza rufipogon	Sesamum indicum	37.07	69.17	86.82	258	forward
CNT3020462	Oryza rufipogon	Citrullus lanatus	38.22	23.75	87.22	266	forward
CNT30727585	Oryza rufipogon	Corchorus capsularis	57.61	29.75	87.03	401	forward
CNT30381152	Oryza rufipogon	Manihot esculenta	54.17	49.02	83.55	377	forward
CNT30194937	Oryza rufipogon	Pisum sativum	56.75	39.54	86.58	395	forward
CNT30503993	Oryza rufipogon	Nicotiana attenuata	27.01	68.36	89.36	188	forward
CNT30712097	Oryza rufipogon	Glycine max	50.72	29.59	85.27	353	forward
CNT30160118	Oryza rufipogon	Pistacia vera	57.61	42.52	87.03	401	forward
CNT30121467	Oryza rufipogon	Physcomitrium patens	56.61	59.43	82.74	394	forward
CNT30224132	Oryza rufipogon	Hordeum vulgare	57.04	57.87	91.44	397	forward
CNT30564257	Oryza rufipogon	Actinidia chinensis	51.01	30.98	86.48	355	forward
CNT30590460	Oryza rufipogon	Musa acuminata	38.07	69.01	84.15	265	forward
CNT30541587	Oryza rufipogon	Brassica napus	56.47	33.42	86.51	393	forward
CNT30238010	Oryza rufipogon	Brassica oleracea	56.47	32.11	85.75	393	forward
CNT30173274	Oryza rufipogon	Trifolium pratense	57.33	29.67	86.97	399	forward
CNT30146334	Oryza rufipogon	Medicago truncatula	56.75	39.74	86.08	395	forward
CNT30440628	Oryza rufipogon	Aegilops tauschii	52.01	49.32	89.23	362	forward
CNT30246955	Oryza rufipogon	Avena sativa	57.47	22.66	92	400	forward
CNT3078925	Oryza rufipogon	Brassica juncea	56.47	33.56	86.01	393	forward
CNT30614172	Oryza rufipogon	Arabis alpina	55.03	38.3	85.12	383	forward
CNT30598015	Oryza rufipogon	Fraxinus excelsior	35.34	49	87.4	246	forward
CNT30449234	Oryza rufipogon	Saccharum spontaneum	57.47	33.36	92.5	400	forward
CNT3011166	Oryza rufipogon	Zea mays	57.33	28.22	90.98	399	forward
CNT30647369	Oryza rufipogon	Rosa chinensis	56.75	43.6	83.54	395	forward
CNT30127375	Oryza rufipogon	Corymbia citriodora	35.92	44.8	86.8	250	forward
CNT30350895	Oryza rufipogon	Eragrostis tef	57.47	35.43	93	400	forward
CNT30368495	Oryza rufipogon	Sorghum bicolor	57.33	39.16	92.98	399	forward
CNT30355601	Oryza rufipogon	Lactuca sativa	56.47	51.78	84.22	393	forward
CNT3053016	Oryza rufipogon	Amborella trichopoda	42.96	32.43	84.28	299	forward
CNT3024428	Oryza rufipogon	Populus trichocarpa	50.72	46.26	85.27	353	forward
CNT30148140	Oryza rufipogon	Brachypodium distachyon	45.11	82.63	92.36	314	forward
CNT30496874	Oryza rufipogon	Digitaria exilis	57.33	35.59	91.98	399	forward
CNT30594462	Oryza rufipogon	Eragrostis curvula	57.47	34.36	92.5	400	forward
CNT30603788	Oryza rufipogon	Oryza punctata	76.01	44.91	93.57	529	forward
CNT30724026	Oryza rufipogon	Lupinus angustifolius	57.33	27.71	84.96	399	forward

Expression of CNT30101006

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIILTIPASPFLRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

>peptide 2 (77 aa)
MMITWEVKLAASLAGSSLELXTSQGWWTSQSCCHPQTQRWERRESCQDCSRPSSGRMRLPSRFHHNGPWSTWEWWHPS

Sequence

>CNT30101006
CATAGTGCACATTGCGAGCAGATATTAACGGTCCATGCAACGAGTACCATGGCCGTGGGCAAAACTTAACGAACGCTAAGATATCTCAAATGCAGCCAGC
ATAACCACCACTTCAACGATGCTCATTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCACCGGTTGGGTCCTTCTTCTCCACGTTCTTGATGACGCCAAC
AGCCACCGTTTGCCTCATGTCACGCACGGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACAACCATGGGCTTGGTGGGAATCATCTTAACC
ATACCAGCATCACCGTTCTTGAGGAACTTGGGCTCCTTCTCCAGCTCCTTGCCGGATCGTCTGTCGATCTTGGTCACCAGCTCAGCAAACTTGACGGCAA
TGTGTGAGGTGTGGCAGTCCAGCACTGGAGCATAGCCGTTACCGATCTGCCCAGGGTGGTTCATGATGATCACCTGGGAGGTGAAGCTGGCAGCCTCCTT
GGCAGGGTCATCCTTGGAGTTANGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAACCCAGAGATGGGAACGAAGGGAATCTTGT
CAGGATTGTAGCCGACCTTCTTCAGGTAGGATGAGACTTCCTTCACGATTTCATCATAACGGGCCTTGGAGTACTTGGGAGTGGTGGCATCCATCT