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Detailed information on CNT3020462


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 9e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521218Citrullus lanatusSetaria italica36.7933.7787.62412forward
CNT30629525Citrullus lanatusVigna unguiculata21.0754.8891.1236forward
CNT30121467Citrullus lanatusPhyscomitrium patens24.0240.5782.16269forward
CNT30224132Citrullus lanatusHordeum vulgare25.8942.2786.21290forward
CNT30387906Citrullus lanatusTriticum turgidum34.2939.5984.11384forward
CNT30440472Citrullus lanatusAegilops tauschii29.4655.4686.36330forward
CNT30265127Citrullus lanatusBrassica rapa13.5759.6186.18152forward
CNT30228831Citrullus lanatusAnanas comosus27.598.0985.39308forward
CNT30651330Citrullus lanatusRosa chinensis21.3454.289.96239forward
CNT30684845Citrullus lanatusTriticum urartu23.315.9387.36261forward
CNT30350899Citrullus lanatusEragrostis tef34.7334.8687.4389forward
CNT30148140Citrullus lanatusBrachypodium distachyon28.383.4288.33317forward
CNT30101006Citrullus lanatusOryza rufipogon23.7538.2287.22266forward

Expression of CNT3020462

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MMITWDVKLAASLAGSSLEFEATKPRLRSLTATFFTLKPTLSPGKASGRDSWCISTDLTSVVSPVGPKGFFLGCIRPS*

>peptide 2 (70 aa)
RTAKRPNGGYEENVSTTIGLVGTILTIPASPFFKNLGSFSSSLPDRRSILVRISANLTAMWEVWQSRTGA*

Sequence

>CNT3020462
CGAACAGCAAAACGACCCAATGGTGGGTATGAGGAGAATGTCTCCACAACCATTGGCTTGGTCGGAACCATCTTAACCATACCGGCATCACCGTTCTTCA
AGAATTTGGGCTCCTTTTCGAGTTCCTTACCAGATCGACGATCAATCTTGGTGAGGATCTCAGCAAACTTAACAGCAATGTGGGAGGTGTGGCAATCAAG
GACTGGGGCATAACCGTTACCAATCTGGCCAGGGTGGTTCATGATGATAACCTGGGATGTGAAGTTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTT
GAGGCAACGAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCAGGCAAGGCCTCTGGCAGAGACTCGTGGTGCA
TTTCAACAGACTTAACTTCAGTGGTGAGTCCAGTTGGTCCAAAGGGATTTTTTCTGGGTTGTATCCGACCTTCTTGAGGTAAGATGAGACTTCCTTCACG
ATTTCGTCGTACCTTGCCTTGGAGTATTTGGGAGTGGTAGCATCCATCTAGAGAAATCACCAATGAAAAGCAACAGCTAATTTGGATTCAATTATGGGAG
AAATATGTGTGCAATTTTTTAAAAGATTCTTAGAATCTAAAAAAAAGCCAGAACAGTAAGCAAATGGAATTTCAGAAAATCATCTACGACAAGGCATGTG
AAAATGGACATTAAAAAGAGGCGAAAAATAGACTCAACAATGTTTCAATATTAATCATATGAGTAGAGGGGTCCGAACCCCCATCGATTCTGTGAAAAGA
ATCACACCAGTTATGGGACCGGAGCCAACACCCAAATAGCCACTCTCCTCAGGGAAACAGATTATTGTCTAATAGAGTGGGCACATATCATAGACAGGAC
AGTAATAAAATAACGTCCGTAGATGCCAATTAATAGCCACATTGCATCATCACTATGAGTGTGACCCTCCATCAGTTTTAAGAGAGTACAATCAATTAGG
CATGTATTATATGGTGGCGAATTTAAAAATTGATGCTAGAAATTATTAAATGCACATACGAGATTAAAACATGTAATATCAGAACGAAGTAGTTAAATAT
ATGAGCGTATATCAACCTTG