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Detailed information on CNT30496962


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Digitaria exilisOryza sativa78.2955.8791.48880forward
CNT30520941Digitaria exilisSetaria italica95.3795.3793.281072forward
CNT30274113Digitaria exilisChenopodium quinoa41.5574.8485.87467forward
CNT30380230Digitaria exilisManihot esculenta78.1136.1985.65878forward
CNT30194937Digitaria exilisPisum sativum78.4788.2985.37882forward
CNT30160120Digitaria exilisPistacia vera78.2970.886.82880forward
CNT30224132Digitaria exilisHordeum vulgare38.5263.1289.61433forward
CNT3084148Digitaria exilisVigna radiata51.635.685.69580forward
CNT30541590Digitaria exilisBrassica napus78.1175.4986.56878forward
CNT30246955Digitaria exilisAvena sativa78.6550.0890.16884forward
CNT30665783Digitaria exilisTriticum dicoccoides74.4791.8886.74837forward
CNT30721805Digitaria exilisTriticum spelta21.2616.5591.63239forward
CNT30350898Digitaria exilisEragrostis tef78.1178.8291.34878forward
CNT30355521Digitaria exilisLactuca sativa60.571.2885.59680forward
CNT30151899Digitaria exilisPrunus persica30.0730.6486.69338forward
CNT30706337Digitaria exilisPrunus avium74.2971.6185.63835forward
CNT3037774Digitaria exilisCucumis melo41.8160.886.81470forward
CNT30148140Digitaria exilisBrachypodium distachyon33.5499.2192.57377forward
CNT30580076Digitaria exilisEchinochloa crusgalli35.8530.4692.31403forward
CNT30116111Digitaria exilisOryza nivara29.6338.0691.29333forward
CNT30594443Digitaria exilisEragrostis curvula78.7476.2390.96885forward
CNT30603820Digitaria exilisOryza punctata78.5681.8491.51883forward
CNT30724026Digitaria exilisLupinus angustifolius75.3658.8285.95847forward

Expression of CNT30496962

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRLRSFTATFFTLKPTLSPGRASWRASWCISTDFTSVVRPVGPKVTTIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

Sequence

>CNT30496962
GGGCAATCACGAGTACTAGCATTCAGCAAGCCGATAGGGGCACTATTCAGACTCAGGTAATTTAAGTTTTGCCAAATCCAAAATATTAAAACTGTATGTA
AACGATAAACAGACTGATGGCACATTGCCAGCTGAGATAGATAGTTCACAACGTAACAGCAATGGCCTTGGACAAAACTTAAAAGAAATTAAAGCATCCA
GATATCCCAAAAGCAGATCCGGAATCAACCACCAGGCACATCATTTCTTCTTGGCCGCAGCCTTGGTGACCTTGGCACCAGTTGGGTCCTTCTTCTCCAC
ACTCTTGATGACTCCGACAGCAACAGTTTGCCTCATGTCACGGACAGCGAAACGACCAAGAGGAGGGTACTCGGAGAAGGTCTCCACCACCATGGGCTTG
GTAGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCAGATCGTCTGTCGATCTTGGTAACCAGCT
CAGCAAACTTGACAGCGATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCAATCTGTCCAGGGTGGTTCATGATGATGACCTGGGAGGT
GAAGCTGGCAGCCTCCTTAGCAGGGTCATCTTTGGAGTTGGAAGCCACATACCCACGCTTGAGATCCTTCACGGCAACGTTCTTCACATTGAAGCCAACG
TTGTCGCCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACAGACTTCACCTCAGTGGTCAGACCAGTTGGCCCAAAGGTGACAACCATACCAG
GCTTGATGATACCGGTCTCAACACGGCCAACAGGGACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCCGAGGG
TCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCGCCCTCAAAA
CCAGAGATGGGCACGAAGGCAATCTTGTCAGGGTTGTAGCCAACCTTCTTGAGGTACGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAGT
ACTTGGGAGTGGTAGCATCCATCT