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Detailed information on CNT30672978


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT001751, E-value = 8e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521302Setaria viridisSetaria italica65.1234.3599.8506forward
CNT30121467Setaria viridisPhyscomitrium patens50.7159.4382.23394forward
CNT30224132Setaria viridisHordeum vulgare51.4858.3190.5400forward
CNT30588719Setaria viridisMusa acuminata29.653.9986.52230forward
CNT30440628Setaria viridisAegilops tauschii46.5949.3290.88362forward
CNT30614172Setaria viridisArabis alpina79.2861.685.55616forward
CNT30598015Setaria viridisFraxinus excelsior61.6595.4288.73479forward
CNT3015747Setaria viridisZea mays75.0381.6590.74583forward
CNT30232362Setaria viridisAnanas comosus32.6944.4885.83254forward
CNT30684514Setaria viridisTriticum urartu51.7451.8791.29402forward
CNT30580076Setaria viridisEchinochloa crusgalli60.7535.6893.22472forward

Expression of CNT30672978

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELESLVVHLNRLHLSSQASWTKGDNHTRLDDTGLNTANRDGSNTTNLVHILKGETQGLVRRPLGLVDLVKSLEQGWALV

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGFVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

Sequence

>CNT30672978
ACCTAAACAACAGACACATGGCACACCGCCAGCGGACCTTTAAAAGTTCAACGACAACAGCAATGACCGGGGACAAAACTAATATGTGATAGTGAAAGTT
ATCTAGGTATCGCAAAAGCAGACACAGGATTAACCACCAGGCGCATCATTTCTTCTTGGCGGCAGCCTTGGTAACCTTGGCGCCGGTCGGGTCCTTCTTC
TCCACGCTCTTGATGACTCCCACAGCAACTGTCTGTCTCATGTCACGGACAGCGAAGCGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGG
GCTTCGTGGGAATCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGCCTGTCGATCTTGGTAAT
GAGCTCAGCAAACTTGACAGCTATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGG
GAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGAGCCTCGTGGTGCATCTCAACAGACTTCACCTCAGTAGTCAGGCCAGTTGGA
CCAAAGGTGACAACCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGA
GACGCAGGGGCTTGTCCGAAGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCGAGCAGGGTTGGGCCCTTGTAC