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Detailed information on CNT30148140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Brachypodium distachyonOryza sativa98.4223.7592.78374forward
CNT30672814Brachypodium distachyonSetaria viridis98.4235.0892.25374forward
CNT30520996Brachypodium distachyonSetaria italica98.4230.0292.78374forward
CNT30639730Brachypodium distachyonNymphaea colorata85.2635.2689.2324forward
CNT30535563Brachypodium distachyonEucalyptus grandis93.1643.3887.85354forward
CNT30316757Brachypodium distachyonCorylus avellana83.4226.4690.22317forward
CNT30546678Brachypodium distachyonIpomoea triloba98.4227.8187.97374forward
CNT30518094Brachypodium distachyonJuglans regia83.4233.8788.01317forward
CNT30698284Brachypodium distachyonQuercus lobata38.4251.0589.73146forward
CNT30371709Brachypodium distachyonArabidopsis thaliana84.2149.6989.06320forward
CNT30618377Brachypodium distachyonSesamum indicum68.6869.9788.89261forward
CNT30274113Brachypodium distachyonChenopodium quinoa57.1134.7886.18217forward
CNT3020462Brachypodium distachyonCitrullus lanatus83.4228.388.33317forward
CNT30727585Brachypodium distachyonCorchorus capsularis93.6826.4187.64356forward
CNT30381152Brachypodium distachyonManihot esculenta94.7446.8186.67360forward
CNT30525464Brachypodium distachyonPhaseolus vulgaris71.5848.1483.46272forward
CNT30629544Brachypodium distachyonVigna unguiculata49.2124.7489.84187forward
CNT30194937Brachypodium distachyonPisum sativum10038.0488.42380forward
CNT30503993Brachypodium distachyonNicotiana attenuata50.5369.8289.58192forward
CNT30712097Brachypodium distachyonGlycine max92.1129.3486.29350forward
CNT30160100Brachypodium distachyonPistacia vera92.1136.9689.14350forward
CNT30121467Brachypodium distachyonPhyscomitrium patens84.2148.2782.5320forward
CNT30224132Brachypodium distachyonHordeum vulgare92.8951.4694.9353forward
CNT30387906Brachypodium distachyonTriticum turgidum96.0537.6386.85365forward
CNT30564256Brachypodium distachyonActinidia chinensis77.1125.1790.78293forward
CNT30590460Brachypodium distachyonMusa acuminata7069.2784.96266forward
CNT30540422Brachypodium distachyonBrassica napus92.1151.1787.71350forward
CNT30238010Brachypodium distachyonBrassica oleracea95.2629.5887.57362forward
CNT30173274Brachypodium distachyonTrifolium pratense10028.2588.16380forward
CNT30146334Brachypodium distachyonMedicago truncatula92.1135.2189.14350forward
CNT30440472Brachypodium distachyonAegilops tauschii83.6853.4594.97318forward
CNT30246955Brachypodium distachyonAvena sativa99.2121.3693.1377forward
CNT30665783Brachypodium distachyonTriticum dicoccoides10041.7187.89380forward
CNT30310418Brachypodium distachyonCamelina sativa82.6327.0788.22314forward
CNT3059230Brachypodium distachyonArabidopsis lyrata83.6826.4687.74318forward
CNT3077051Brachypodium distachyonBrassica juncea93.6830.8588.48356forward
CNT30265127Brachypodium distachyonBrassica rapa40.7960.7887.74155forward
CNT30614135Brachypodium distachyonArabis alpina83.6820.3887.42318forward
CNT30598015Brachypodium distachyonFraxinus excelsior65.5349.689.56249forward
CNT30449969Brachypodium distachyonSaccharum spontaneum97.6329.490.03371forward
CNT30132437Brachypodium distachyonLolium perenne96.0530.3787.4365forward
CNT3011166Brachypodium distachyonZea mays96.0525.8191.23365forward
CNT30608730Brachypodium distachyonGossypium raimondii64.2140.6788.11244forward
CNT30228831Brachypodium distachyonAnanas comosus32.8939.8192125forward
CNT30651330Brachypodium distachyonRosa chinensis45.5339.2391.33173forward
CNT30203420Brachypodium distachyonHelianthus annuus47.1135.6685.47179forward
CNT30127375Brachypodium distachyonCorymbia citriodora81.5855.5688.39310forward
CNT30684514Brachypodium distachyonTriticum urartu90.2644.2694.17343forward
CNT30721809Brachypodium distachyonTriticum spelta5513.8591.87209forward
CNT30350899Brachypodium distachyonEragrostis tef96.0532.7190.41365forward
CNT30368495Brachypodium distachyonSorghum bicolor97.6336.4191.37371forward
CNT30355697Brachypodium distachyonLactuca sativa94.7443.8585360forward
CNT30426682Brachypodium distachyonPapaver somniferum98.4228.2987.17374forward
CNT30706337Brachypodium distachyonPrunus avium96.3231.3986.89366forward
CNT3024315Brachypodium distachyonPopulus trichocarpa91.5845.6185.06348forward
CNT30101006Brachypodium distachyonOryza rufipogon82.6345.1192.36314forward
CNT30579541Brachypodium distachyonEchinochloa crusgalli62.6341.3293.7238forward
CNT30496962Brachypodium distachyonDigitaria exilis99.2133.5492.57377forward
CNT30116376Brachypodium distachyonOryza nivara43.6830.5792.77166forward
CNT30594462Brachypodium distachyonEragrostis curvula99.2132.3990.19377forward
CNT30603788Brachypodium distachyonOryza punctata98.4231.7593.05374forward
CNT30176122Brachypodium distachyonVigna angularis94.7431.882.78360forward
CNT30724026Brachypodium distachyonLupinus angustifolius94.742586.11360forward
CNT3050518Brachypodium distachyonCucumis sativus80.2649.1185.57305forward

Expression of CNT30148140

Peptides detected in this lncRNA

>peptide 1 (63 aa)
QLFVSCHAQQNDQEEGTWRRSPQPWAWWESSSRYQHHRSSRTWAPSPAPYQIACRSWSPAPQT*

>peptide 2 (77 aa)
ATVCLMSRTAKRPRGGYMAKVSTTMGLVGIIFTIPASPFFKNLGSFSSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

>peptide 3 (38 aa)
MMMTCEVKLAASLAGSSLELDATNPRLRSFTATFFTLKP

>peptide 4 (91 aa)
NCLSHVTHSKTTKRRVHGEGLHNHGLGGNHLHDTSITVLQELGLLLQLLTRSPVDLGHQLRKLDSNVGGVAVQHWGVAVANLTRVVHDDDL*

Sequence

>CNT30148140
GCAACTGTTTGTCTCATGTCACGCACAGCAAAACGACCAAGAGGAGGGTACATGGCGAAGGTCTCCACAACCATGGGCTTGGTGGGAATCATCTTCACGA
TACCAGCATCACCGTTCTTCAAGAACTTGGGCTCCTTCTCCAGCTCCTTACCAGATCGCCTGTCGATCTTGGTCACCAGCTCCGCAAACTTGACAGCAAT
GTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCAATCTGACCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCCTCCTTG
GCAGGGTCATCCTTGGAGTTGGATGCAACAAACCCACGCTTGAGATCCTTCACAGCAACATTCTTCACATTGAAGCCGAC