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Detailed information on CNT30387906


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40034|EF1A2_HORVU, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 1e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020462Triticum turgidumCitrullus lanatus39.5934.2984.11384forward
CNT30629687Triticum turgidumVigna unguiculata32.8916.1587.15319forward
CNT30121467Triticum turgidumPhyscomitrium patens46.9168.6381.1455forward
CNT30224132Triticum turgidumHordeum vulgare44.6463.1287.07433forward
CNT30440878Triticum turgidumAegilops tauschii27.5333.9794.76267forward
CNT30647369Triticum turgidumRosa chinensis43.0946.1483.01418forward
CNT30684635Triticum turgidumTriticum urartu51.2460.1791.95497forward
CNT30721805Triticum turgidumTriticum spelta24.6416.5594.14239forward
CNT30350899Triticum turgidumEragrostis tef53.9246.8687.38523forward
CNT30148140Triticum turgidumBrachypodium distachyon37.6396.0586.85365forward
CNT3050518Triticum turgidumCucumis sativus25.8840.4286.45251forward

Expression of CNT30387906

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSRTAKRPRGGYWAKVSTTMGLVGIILTNPASPFFRNLGAASISLPDRRSILVWISANLTAMWDVWQSSTGA*

>peptide 2 (85 aa)
MMMTWAVKLAASLAGSSLELEATYPRLRSLTATFLTLKPTLSPGSASRRDSWCISTDFTSVTTMPGLMTPVSTRPTGTVPMPPIL*

Sequence

>CNT30387906
CTCGACACAAATAACCGAAGCTTAACAAGTTCTCAAAACGACTAGAACAACTATCACCACCACCAAATACCGCCACCGCCACCACCACCATAGATGCAGT
AAAGAACCTGACATCTCATTTCTTCTTGGCCGCAGCCTTGGTCACCTTGGCGCCGGTCGGATCCTTCTTCTCCACGGCCTTGATAACGCCCACGGCAACC
GTCTGCCTCATGTCGCGCACAGCAAAGCGGCCCAGGGGAGGGTACTGGGCGAAGGTCTCCACCACCATGGGCTTGGTGGGGATCATCTTGACGAACCCGG
CATCACCGTTCTTCAGGAACTTGGGCGCCGCCTCAATCTCCTTGCCAGACCGCCGGTCGATCTTGGTCTGGATCTCAGCGAACTTGACAGCGATGTGGGA
CGTGTGGCAGTCCAGCACCGGGGCATAGCCGTTGCTGATCTGGCCAGGGTGGTTCATGATGATGACCTGGGCCGTGAAGTTGGCAGCCTCCTTGGCAGGG
TCGTCCTTGGAGTTGGAAGCGACATACCCACGCTTGAGATCCTTGACGGCCACGTTCTTGACGTTGAAGCCAACATTGTCGCCAGGAAGCGCCTCCAGGA
GAGACTCGTGGTGCATCTCCACAGACTTCACCTCAGTGACAACCATGCCTGGCTTGATGACTCCAGTCTCAACACGCCCCACTGGCACAGTTCCAATGCC
ACCAATCTTGTAGACGTCCTGAAGGGGAAGACGCAGGGGCTTGTCGGAGGGCCTCTTGGGCTCATTGATCTGGTCCAGGGCCTCAAGAAGGGTGGGGCCC
TTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCGCCCTCAAACCCAGAGATGGGAACGAAGGGAACCTTGTCAGGGTTGTAACCGACCTTCT
TCAGGTATGAAGAGACTTCCTTGACAATTTCTTCATAACGGGCCTTCGAGTACTTGGGAGTGGTGGCATC