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Detailed information on CNT30246955


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Avena sativaOryza sativa50.5956.790.15893forward
CNT30677701Avena sativaSetaria viridis38.6499.5690.91682forward
CNT30521010Avena sativaSetaria italica50.0881.190.38884forward
CNT30639730Avena sativaNymphaea colorata30.5458.6585.53539forward
CNT30535563Avena sativaEucalyptus grandis42.6192.1685.37752forward
CNT30316757Avena sativaCorylus avellana40.4559.687.11714forward
CNT30546799Avena sativaIpomoea triloba49.0770.5284.53866forward
CNT30518094Avena sativaJuglans regia45.6786.1185.36806forward
CNT30371709Avena sativaArabidopsis thaliana34.9695.8188.01617forward
CNT3021232Avena sativaCitrullus lanatus47.6567.9382.28841forward
CNT30727590Avena sativaCorchorus capsularis47.9962.5186.19847forward
CNT30380230Avena sativaManihot esculenta49.7536.1984.85878forward
CNT30525464Avena sativaPhaseolus vulgaris33.03103.1982.33583forward
CNT30629525Avena sativaVigna unguiculata21.8789.7786.79386forward
CNT30194937Avena sativaPisum sativum49.6987.7984.04877forward
CNT30160120Avena sativaPistacia vera50.1471.285.65885forward
CNT30287202Avena sativaTriticum aestivum26.6365.3790.64470forward
CNT30224132Avena sativaHordeum vulgare24.5363.1293.3433forward
CNT30564256Avena sativaActinidia chinensis34.7952.7586.81614forward
CNT3084148Avena sativaVigna radiata32.9235.6784.17581forward
CNT30541591Avena sativaBrassica napus50.0875.1784.5884forward
CNT30233904Avena sativaBrassica oleracea46.7489.9784.85825forward
CNT30173274Avena sativaTrifolium pratense47.5962.4586.9840forward
CNT30146334Avena sativaMedicago truncatula35.362.6886.84623forward
CNT30440628Avena sativaAegilops tauschii20.5149.3293.09362forward
CNT30665783Avena sativaTriticum dicoccoides47.8892.7690.06845forward
CNT30310418Avena sativaCamelina sativa49.6375.5285.84876forward
CNT3059230Avena sativaArabidopsis lyrata49.7573.0485.99878forward
CNT30614135Avena sativaArabis alpina42.4948.0886.4750forward
CNT30598511Avena sativaFraxinus excelsior27.3174.0484.85482forward
CNT30449495Avena sativaSaccharum spontaneum49.8672.3189.32880forward
CNT3011166Avena sativaZea mays50.0862.5289.14884forward
CNT30608730Avena sativaGossypium raimondii25.57586.22450forward
CNT30127375Avena sativaCorymbia citriodora29.894.2785.93526forward
CNT30685098Avena sativaTriticum urartu30.9937.2192.32547forward
CNT30721807Avena sativaTriticum spelta16.1531.793.68285forward
CNT30350898Avena sativaEragrostis tef49.878.990.67879forward
CNT30480841Avena sativaArabidopsis halleri22.4963.9387.66397forward
CNT30368495Avena sativaSorghum bicolor41.5371.9389.77733forward
CNT30355521Avena sativaLactuca sativa39.0472.2284.91689forward
CNT30427598Avena sativaPapaver somniferum49.2463.5285.04869forward
CNT30706337Avena sativaPrunus avium47.5972.0485.36840forward
CNT3024428Avena sativaPopulus trichocarpa31.0571.8284.12548forward
CNT3037774Avena sativaCucumis melo26.4660.4185.87467forward
CNT30148140Avena sativaBrachypodium distachyon21.3699.2193.1377forward
CNT30101006Avena sativaOryza rufipogon22.6657.4792400forward
CNT30580076Avena sativaEchinochloa crusgalli22.8330.4689.83403forward
CNT30496962Avena sativaDigitaria exilis50.0878.6590.16884forward
CNT30594443Avena sativaEragrostis curvula50.276.3190.52886forward
CNT30603820Avena sativaOryza punctata50.0881.9390.38884forward
CNT30176122Avena sativaVigna angularis48.2775.2781.81852forward
CNT30113122Avena sativaFicus carica26.4656.2785.44467forward
CNT30724026Avena sativaLupinus angustifolius47.9358.7584.28846forward

Expression of CNT30246955

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVHLNRFYLSGQTSGTKGHNHTRLDDTCLNTANRHSSNATNLVNILEGKTQGLV*

>peptide 2 (93 aa)
MMMTWEVKLAASLAGSSLELDATNPRLRSFTATFLTLKPTLSPGSASRRDSWCISTDFTSVVRPVGPKVTTIPGLMTPVSTRPTGTVPMPPIL*

>peptide 3 (43 aa)
MGLVGIIFTIPASPFFRNLGSFSISLPDRLSILVTSSANFTAM*

Sequence

>CNT30246955
ATGCTCATCCTAATAACAAAATGAATAACTGGGATACAAAACTTTAGGACATCAATTTGACGATCTTAAAAAGTTGAACAACAAGAAACAAATTCTGCAG
TGGCAAGCACAGAAGAATCAGTGAAAAAGCAAATGAAGAAACAGGCATTAGGAAATTGCAATTTAAAGACTTGCATTCCACAACTCAGACTTTAGACTTT
AGCCGAACATCAAATAGGAATACAGTATTTAAACGACAGACCAGATCATTGCTTGAAGGTTTAGACAGTCTTCAGCAATAAGAGCCATGCACACGAACAA
AACTTAATACTAAAACTTAAGCTAGATATCACACAAACTGAACCACTCATTTCTTCTTGGCGGCAGCCTTGGTAACCTTGGCACCGGTGGGGTCCTTCTT
CTCCACGCCCTTGATGACACCAACAGCAACCGTTTGTCTCATGTCACGCACAGCGAACCGACCAAGAGGAGGGTAGGTAGAGAAGGTCTCCACAACCATG
GGCTTGGTGGGAATCATCTTCACTATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCAATCTCCTTGCCAGATCGTCTGTCAATCTTGGTCA
CCAGCTCAGCAAACTTCACAGCAATGTGAGACGTGTGGCAGTCCAGTACTGGGGCGTAGCCGTTGCCGATCTGACCAGGGTGGTTCATGATGATGACCTG
GGAGGTGAAGTTGGCCGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGATGCCACAAACCCACGCTTGAGATCCTTCACGGCAACATTCTTGACGTTGAAG
CCAACATTGTCACCAGGGAGCGCCTCCAGGAGAGACTCATGGTGCATCTCAACAGATTTTACCTCAGTGGTCAGACCAGTGGGACCAAAGGTCACAACCA
TACCAGGCTTGATGACACCTGTCTCAACACGGCCAACAGGCACAGTTCCAATGCCACCAATCTTGTAAACATCCTGGAGGGGAAGACGCAGGGGCTTGTC
TGAAGGTCTCTTGGGCTCATTGATCTGGTCGAGCGCCTCAAGCAGGGTAGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTATCACCC
TCAAATCCAGAAATGGGAACAAACGGCACCTTGTCAGGGTTGTAACCGACCTTCTTGAGGTATGAAGAGACCTCCTTAACAATTTCCTCATAACGGCCCT
TTGAGTACTTGGGAGTGGTGGCATCCATCTGCAACAGATCAGAAGAGCATTGCAATCAGATAAATGCACAAGAGTCCTAGTACTACTGATAAAAGCAATA
GCATTCCATCAGTGCATTCAAATATCAGAAAATAATGTGTATAATGAAATAAACATATCATATGGACAAGTGGCAAATAATAAATTTCTGAAGTAAAGTG
TGGCAAATGATAAAATATCCCGGACAAGTGGCATGGATAAAGAGGTAATGGGTAAACAAACTATGGCATAAGTACAATAAATCCAAAACAGAAACAGAAA
CAGAAACAACATTCAAGGCATAACAAGTGAAGTATATTACATGAAACCACTAGAGATTCAGAGTATTATAAATGTTACTGAATTTTCAAGTTTCCATTAA
TCCAAAGCATTCAAGTGATGTTTCATAGGATGTATATGCTGCATAATATACAAGGAATAAGAGAACTAACACTTACTAATTATTTAATTTAATATTATTA
AATTTCAATGCAGCAATCAAATAAGAAATATAAGAAATACTACAGGAAGATACAGCAACATAAAA