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Detailed information on CNT30521218


BLAST search results

BLAST vs Swiss-Prot:
sp|P50378|EFTU_GONPE, E-value = 7e-13

BLAST vs NONCODE:
NONBNAT001751, E-value = 2e-155

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020462Setaria italicaCitrullus lanatus33.7736.7987.62412forward
CNT30224132Setaria italicaHordeum vulgare3562.2490.16427forward
CNT3037774Setaria italicaCucumis melo38.6160.9387.47471forward

Expression of CNT30521218

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GTKLICDSESYLGIAKADTGLTTRRIISSWRQPW*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGFVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 3 (93 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSLTATFFTLKPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPIL*

Sequence

>CNT30521218
CGGGGACAAAACTAATATGTGATAGTGAAAGTTATCTAGGTATCGCAAAAGCAGACACAGGATTAACCACCAGGCGCATCATTTCTTCTTGGCGGCAGCC
TTGGTAACCTTGGCGCCGGTCGGGTCCTTCTTCTCCACGCTCTTGATGACTCCCACAGCAACTGTCTGTCTCATGTCACGGACAGCGAAGCGACCAAGAG
GAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTTCGTGGGAATCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCAAG
CTCCTTACCGGATCGCCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCTATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCG
ATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGAACCCACGCTTGA
GATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACAGACTTCACCTCAGT
AGTCAGGCCAGTTGGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTGA
AGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACGTT
GTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACAGACTTCACCTCAGTAGTCAGGCCAGTTGGACCAAAGGTGACAAGCATACCAGGC
TTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCCGAAGGCC
TCTTGGGCTCGTTGATCTGGTCAAGAGCCTCGAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACC
GGAGATGGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTTCAGGTAGGAGGAGACTTCCTTAACAATCTCATCATAACGGGCCTTGGAGTAC
TTGGGAGTGGTGGCGTCCAT