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Detailed information on CNT30121467


BLAST search results

BLAST vs Swiss-Prot:
sp|P25698|EF1A_SOYBN, E-value = 2e-90

BLAST vs NONCODE:
NONBNAT007048, E-value = 3e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Physcomitrium patensOryza sativa69.3829.2183.7460forward
CNT30672978Physcomitrium patensSetaria viridis59.4350.7182.23394forward
CNT30520996Physcomitrium patensSetaria italica69.0836.7682.31458forward
CNT30639730Physcomitrium patensNymphaea colorata57.7741.6880.94383forward
CNT30618377Physcomitrium patensSesamum indicum30.9254.9682.44205forward
CNT3020462Physcomitrium patensCitrullus lanatus40.5724.0282.16269forward
CNT30503993Physcomitrium patensNicotiana attenuata35.685.8280.93236forward
CNT30160118Physcomitrium patensPistacia vera56.7139.8781.12376forward
CNT30224132Physcomitrium patensHordeum vulgare59.4357.4381.22394forward
CNT30387906Physcomitrium patensTriticum turgidum68.6346.9181.1455forward
CNT30588719Physcomitrium patensMusa acuminata29.2645.5481.96194forward
CNT30310177Physcomitrium patensCamelina sativa68.3339.0583.22453forward
CNT3059230Physcomitrium patensArabidopsis lyrata68.3337.6983453forward
CNT30265127Physcomitrium patensBrassica rapa21.5756.0886.01143forward
CNT30232362Physcomitrium patensAnanas comosus34.6940.2884.78230forward
CNT30350897Physcomitrium patensEragrostis tef69.0860.2681.66458forward
CNT30355697Physcomitrium patensLactuca sativa68.3355.1881.02453forward
CNT30369801Physcomitrium patensOryza glumipatula13.7321.4690.1191reverse complement
CNT30483069Physcomitrium patensChara braunii29.5622.7986.73196forward
CNT30148140Physcomitrium patensBrachypodium distachyon48.2784.2182.5320forward
CNT30101006Physcomitrium patensOryza rufipogon59.4356.6182.74394forward
CNT30116376Physcomitrium patensOryza nivara36.3544.3884.23241forward
CNT3050518Physcomitrium patensCucumis sativus46.4649.681.82308forward
CNT3039699Physcomitrium patensMarchantia polymorpha21.2716.5783.69141forward

Expression of CNT30121467

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MMITCAVKFAASFAGSFFESEATYPLFRSFTATFFTLNPT

>peptide 2 (74 aa)
MVGTPRTSPPSSASSESSSRTLRLRSSKTSAPSPAPYPIACPPSSRSPQTSPQCATCGNPALAHNRYRSVPGGS*

>peptide 3 (45 aa)
MSPTKTQPLTSSWRRPWSPWHQRFTSSWRRPWSPWHQLAPSSPQP*

>peptide 4 (81 aa)
MTPTATVCLMSRTANRPNGGYSANVSTVIGFVGIIFTNPASPFFKNFGSFSSSLPDRLSTFVKISANFTAMCDVWQSSTGA*

Sequence

>CNT30121467
GTTGGATACAAAAAACGAGACGCAGTGCAGTGCAGATAACCAATTAACAGCGCTGCCATTCCACCCAAAGAAAACGGCATAAACAAGCTCGAGAAGTGCC
GACGCCAGAGGCGGCATCGAACAAATAAATTATGTCACCGACTAAAACCCAACCCCTCACTTCTTCTTGGCGGCGGCCTTGGTCACCTTGGCACCAGAGA
TTTACTTCTTCTTGGCGGCGGCCTTGGTCACCTTGGCACCAGTTGGCTCCTTCTTCTCCACAGCCTTGATGACACCCACAGCCACCGTCTGCCTCATGTC
CCGCACCGCGAACCGTCCCAATGGTGGGTACTCCGCGAACGTCTCCACCGTCATCGGCTTCGTCGGAATCATCTTCACGAACCCTGCGTCTCCGTTCTTC
AAAAACTTCGGCTCCTTCTCCAGCTCCTTACCCGATCGCCTGTCCACCTTCGTCAAGATCTCCGCAAACTTCACCGCAATGTGCGACGTGTGGCAATCCA
GCACTGGCGCATAACCGTTACCGATCTGTCCCGGGTGGTTCATGATGATAACCTGCGCCGTAAAGTTTGCTGCCTCCTTTGCAGGGTCATTCTTCGAGTC
TGAGGCCACGTACCCTCTCTTCAGGTCCTTCACCGCCACATTCTTCACGTTGAACCCAACGTT