Detailed information on CNT30611975


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 4e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Arabis alpinaSetaria viridis50.3463.0484.97672forward
CNT30377782Arabis alpinaArabidopsis thaliana53.0370.192.09708forward
CNT30503993Arabis alpinaNicotiana attenuata15.4374.9189.81206forward
CNT30712097Arabis alpinaGlycine max22.3224.9889.6298forward
CNT30224132Arabis alpinaHordeum vulgare31.9162.182.86426forward
CNT30146334Arabis alpinaMedicago truncatula48.3964.9983.59646forward
CNT30721809Arabis alpinaTriticum spelta20.918.4982.8279forward
CNT30368495Arabis alpinaSorghum bicolor53.4169.9784.71713forward
CNT30151899Arabis alpinaPrunus persica24.2729.3787.04324forward
CNT3052982Arabis alpinaAmborella trichopoda33.3334.0283.37445forward

Expression of CNT30611975

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIPRSRSALSLSNTHAYLKDLLFISAASFSNLSITRLSIPPSL*

>peptide 2 (48 aa)
MVHLNRLHLSGQPCRSKGHNHTRLDHTGLNTSNWHRSNTTNLVNILKW*

>peptide 3 (93 aa)
MMMTWEVKLAAPLAGSSLEFEATYPRLRSFTATFLTLNPTLSPGSASRRDSWCISTDFTSVVNPVGAKVTTIPGLIIPVSTRPTGTVPIPPIL*

>peptide 4 (81 aa)
MTPTATVCLMSLTAKRPNGGYSMKVSTTIGLVGVIFTIPASPFFKNLGSFSISLPERLSILVKISVNLTAMWDVWQSRTGA*

>peptide 5 (92 aa)
MTRSINNCAVVLSSLELPESNINGNTTFTLSLKFVQHPCILERPLVHLSSLLLKPLNHTLVNTSKLVDQVTSGGRFTRVDMTNNHNVDVKLLF

>peptide 6 (38 aa)
MQTSNSATSDQEPNYENCTLMETKRRNCNTNKQPNTKL*

Sequence

>CNT30611975
GAAGTTGTAAATGACAAAAAGGAAATATCGAACTGAAAACTGATATCAAATCCGCAGGAAAATCATATTCATATAATAGAATCTCCAAAAAAGTTCAAAA
CCACAAAGCAAATGAAACAGAAAAATAGGAAGCATGAATGCAAACTAGTAACTCCGCCACCTCCGATCAAGAACCCAACTACGAGAATTGCACTCTGATG
GAGACAAAACGAAGAAACTGTAACACAAACAAGCAACCAAATACCAAACTATAGCAATAAAACTAAAAATGTTCTCTTCTGCGGTCCATGATGATGATTG
AATAGTTCACTTGGCACCCTTCTTGACGGCAGCCTTGGTAACCTTGGCTCCGGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCGACTGCAACGGTC
TGCCTCATGTCCCTAACAGCGAAACGACCCAATGGTGGGTACTCCATGAAGGTCTCAACAACCATAGGCTTGGTCGGAGTCATCTTCACCATACCAGCAT
CACCATTCTTCAAAAACTTAGGCTCCTTCTCAATCTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGTGAACTTGACTGCAATGTGGGACGT
GTGGCAATCAAGAACCGGGGCGTAACCGTTACCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTAGCAGCACCTTTAGCTGGATCA
TCCTTGGAGTTTGAGGCGACATACCCACGCTTAAGATCCTTCACAGCAACATTCTTAACATTGAATCCAACATTGTCACCTGGAAGTGCCTCAAGAAGAG
ACTCATGGTGCATCTCAACAGACTTCACCTCAGTGGTCAACCCTGTAGGAGCAAAGGTCACAACCATACCAGGCTTGATCATACCGGTCTCAACACGTCC
AACTGGCACCGTTCCAATACCACCAATCTTGTAAACATCCTGAAGTGGTAGACGGAGGGGCTTGTCTGATGGCCTCTTTGGCTCGTTGATAGCATCCAAA
GCCTCAAGAAGAGTTGGTCCCTTGTACCAGTAATCATGTTCTTAATGAAATCACGATGACCAGGAGCATCAATAACTGTGCAGTAGTACTTAGTAGTCTC
GAACTTCCAGAGAGCAATATCAATGGTAATACCACGTTCACGCTCAGCCTTAAGTTTGTCCAACACCCATGCATACTTGAAAGACCTCTTGTTCATCTCA
GCAGCCTCCTTCTCAAACCTCTCAATCACACGCTTGTCAATACCTCCAAGCTTGTAGATCAAGTGACCAGTGGTGGTCGATTTACCAGAGTCGACATGAC
CAATAACCACAATGTTGATGTGAAACTTCTCTTTA