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Detailed information on CNT30647369


BLAST search results

BLAST vs Swiss-Prot:
sp|P25698|EF1A_SOYBN, E-value = 9e-144

BLAST vs NONCODE:
NONGMAT001702, E-value = 1e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Rosa chinensisOryza sativa46.3626.6784.05420forward
CNT30673332Rosa chinensisSetaria viridis46.1450.1283.49418forward
CNT30535563Rosa chinensisEucalyptus grandis37.241.386.94337forward
CNT30546678Rosa chinensisIpomoea triloba31.0220.8990.39281forward
CNT30518094Rosa chinensisJuglans regia47.1345.6284.31427forward
CNT30377782Rosa chinensisArabidopsis thaliana43.4939.0184.52394forward
CNT30618377Rosa chinensisSesamum indicum27.767.2986.85251forward
CNT3021028Rosa chinensisCitrullus lanatus31.923.2789.27289forward
CNT30727588Rosa chinensisCorchorus capsularis31.2421.0688.69283forward
CNT30381152Rosa chinensisManihot esculenta42.650.285.75386forward
CNT30629687Rosa chinensisVigna unguiculata31.914.6388.58289forward
CNT30194937Rosa chinensisPisum sativum46.5842.2486.49422forward
CNT30503993Rosa chinensisNicotiana attenuata25.7284.7387.55233forward
CNT30712097Rosa chinensisGlycine max41.531.5286.44376forward
CNT30160100Rosa chinensisPistacia vera46.6944.6787.71423forward
CNT30637620Rosa chinensisCapsicum annuum22.7410.7386.89206forward
CNT30296842Rosa chinensisTriticum aestivum28.5937.1688.42259forward
CNT30224132Rosa chinensisHordeum vulgare44.5958.8981.93404forward
CNT30387906Rosa chinensisTriticum turgidum46.1443.0983.01418forward
CNT30564257Rosa chinensisActinidia chinensis32.0125.3187.59290forward
CNT30541587Rosa chinensisBrassica napus45.9235.3784.13416forward
CNT30234210Rosa chinensisBrassica oleracea45.737.684.3414forward
CNT30173274Rosa chinensisTrifolium pratense46.1431.0885.65418forward
CNT30146334Rosa chinensisMedicago truncatula46.5842.4585.31422forward
CNT30440878Rosa chinensisAegilops tauschii27.731.9387.65251forward
CNT30665783Rosa chinensisTriticum dicoccoides30.9130.7488.57280forward
CNT30310418Rosa chinensisCamelina sativa45.0335.1785.29408forward
CNT3059455Rosa chinensisArabidopsis lyrata43.3830.8785.75393forward
CNT3075495Rosa chinensisBrassica juncea45.736.2285.27414forward
CNT30598511Rosa chinensisFraxinus excelsior31.5743.9385.31286forward
CNT30132437Rosa chinensisLolium perenne30.9123.2985.71280forward
CNT3015474Rosa chinensisZea mays30.464887.32276forward
CNT30684514Rosa chinensisTriticum urartu75.7288.5284.55686forward
CNT30350895Rosa chinensisEragrostis tef46.3637.285.24420forward
CNT30368719Rosa chinensisSorghum bicolor31.3520.9787.68284forward
CNT30355601Rosa chinensisLactuca sativa75.7290.3885.42686forward
CNT30426682Rosa chinensisPapaver somniferum43.8230.0384.63397forward
CNT30706337Rosa chinensisPrunus avium32.3425.1392.15293forward
CNT3024428Rosa chinensisPopulus trichocarpa41.3949.1585.07375forward
CNT3037774Rosa chinensisCucumis melo28.733.6488.85260forward
CNT30101006Rosa chinensisOryza rufipogon43.656.7583.54395forward
CNT30580076Rosa chinensisEchinochloa crusgalli31.5721.6288.11286forward
CNT30594462Rosa chinensisEragrostis curvula46.3636.0884.52420forward
CNT30176122Rosa chinensisVigna angularis37.8630.385.13343forward
CNT30724026Rosa chinensisLupinus angustifolius46.1429.0387.8418forward
CNT3050518Rosa chinensisCucumis sativus28.741.8788.08260forward

Expression of CNT30647369

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MMTWAVKLAASLAGSSLEFEATYPRLIIPVSTRPTGTVPIPPIL*

>peptide 2 (71 aa)
MTPTATVWRMSLTAKRPSGGYSEKVSTTMGLVGIILTNPASPFFKNLGSFSSSLPERLSILVKISLNLTAM*

>peptide 3 (45 aa)
MSRASRRVGPLYQSRLVDLSIMLSPSNPEMGTKAILSGLYPIFFR*

>peptide 4 (84 aa)
MAFTCTCKAHNSLLLGCRLGNLGSAGILLLHSLDDSHSNRLAHVPHSKTTKWGILRESFNDHGLGGNHLNKPCVTILQKLGLLL*

Sequence

>CNT30647369
AGAAAACACAAGCAAGCTCGCCACCGCCTATCGAGCACCCAATTCTGTGAACAGCCACACGAAGACGGAGGAAACTTGAGGCTATGACTGACAAAGACGA
CAACTAAAGACCAACTGAAAATACTAGTAGCAACCACCCATGCTTTATTATAACCACACTGAAGATGGCCTTCACTTGCACCTGCAAAGCGCACAATTCA
CTTCTTCTTGGCTGCAGACTTGGTAACCTTGGCTCCGCTGGGATCCTTCTTCTCCACAGCCTTGATGACTCCCACAGCAACCGTCTGGCGCATGTCCCTC
ACAGCAAAACGACCAAGTGGGGGATACTCAGAGAAAGTTTCAACGACCATGGGCTTGGTGGGAATCATCTTAACAAACCCTGCGTCACCATTCTTCAAAA
ACTTGGGCTCCTTCTCTAGCTCCTTGCCAGAACGTCTGTCAATCTTGGTCAAAATCTCATTGAACTTGACAGCAATGTGAGAGGTGTGGCAATCAAGCAC
AGGAGCATAACCGTTTCCAATCTGGCCAGGGTGATTCATAATGATGACCTGGGCAGTGAAGTTAGCTGCTTCCTTGGCTGGATCATCCTTGGAGTTTGAA
GCAACATACCCACGCTTGATAATACCAGTCTCAACACGTCCAACAGGAACAGTTCCAATACCTCCAATCTTGTAGACATCCTGAAGTGGAAGTCGGAGGG
GTTTGTCGGAGGGCCTCTTGGGCTCGTTGATCATGTCAAGGGCCTCAAGAAGGGTTGGACCCTTGTACCAGTCGAGGTTGGTGGACCTCTCAATCATGTT
GTCACCCTCAAATCCAGAGATGGGAACAAAAGCAATTTTGTCTGGGTTGTATCCAATCTTCTTCAGATAGGATGACACTTCCTTCACGATTTCATCATAC
CTTGCC