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Detailed information on CNT30160118


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 4e-90

BLAST vs NONCODE:
NONMEST004097, E-value = 8e-161

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503993Pistacia veraNicotiana attenuata24.7184.7387.98233forward
CNT30121467Pistacia veraPhyscomitrium patens39.8756.7181.12376forward
CNT30224132Pistacia veraHordeum vulgare43.1659.3384.77407forward
CNT3053016Pistacia veraAmborella trichopoda32.1332.8685.48303forward
CNT30101006Pistacia veraOryza rufipogon42.5257.6187.03401forward
CNT30116376Pistacia veraOryza nivara26.7246.4187.7252forward

Expression of CNT30160118

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQQTTLQILDSNFLTLKPHCHQEEPPGELHGASQRT*

>peptide 2 (40 aa)
MVHLNGLNFSVSPVGPNVTTIPGLRTPVSTRPTGTFPIPPI

>peptide 3 (72 aa)
MSLTAKRPRGGYSENVSTTMGLVGTILTNPASPFFKNLGSFSSSLPDRLSILVKISENLTAMWEVWQSSTGA*

Sequence

>CNT30160118
AATTAATACAAAATTTCAGGACTCGGGCTCTTACCTCTAACAAAACTAAATAACTCAATTTAGCAATGCAGCATTAGCTATCAAATTGAAACCATGATGT
TTTAACATTTTGGGATTTGGTTCAGTAACACAAGAACTCATTTTAAAGCCTATAAAACCAAATCAAGAAAAGCAAATCCCGACTTCCATCACAACCAGTT
GAGCACCAGATGATATCCAACTGCTCAACTTTAGCGGTACTGTAATGGATATGGATATAAAAACTGTCCACAAAAACAACATTAAACAGAACAGAAAATA
CGCCTAGCTACCATAGACCTCCAAAACACCTCACTTCTTCTTAGCTGCAGATTTGGTGACCTTGGCACCTGATGGGTCCTTCTTGTCGACACTCTTGATG
ACACCAACAGCCACTGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGGAGGGTACTCAGAGAATGTCTCGACAACCATGGGCTTGGTTGGAACCA
TCTTAACGAACCCAGCATCACCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCAGATCGTCTGTCAATCTTGGTCAAGATCTCAGAGAACTT
AACAGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGAGCATAACCGTTACCAATCTGGCCAGGGTGGTTCATGATGATGACCTGAGAGGTGAAGTTAGCA
GCCTCCTTGGCAGGATCATCCTTGGAGTTAGATGCAACAAACCACGCTTCAGATCCTTGACAGCAACTTCTTAACGTTGAAACCCCATTGTCACCAGGAA
GAGCCTCCGGGAGAGCTTCATGGTGCATCTCAACGGACTTAACTTCAGTGTCAGTCCAGTGGGGCCAAATGTAACAACCATACCAGGCTTGAGGACACCG
GTTTCCACACGACCCACTGGGACATTTCCAATACCACCAATCT