Detailed information on CNT30203420


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT008675, E-value = 6e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678410Helianthus annuusSetaria viridis96.8176.0681.48486forward
CNT30639730Helianthus annuusNymphaea colorata49.426.9985.08248forward
CNT30274113Helianthus annuusChenopodium quinoa53.9843.4382.66271forward
CNT30629525Helianthus annuusVigna unguiculata49.457.6784.68248forward
CNT30224132Helianthus annuusHordeum vulgare30.8822.5986.45155forward
CNT30540422Helianthus annuusBrassica napus38.8428.5189.23195forward
CNT30146188Helianthus annuusMedicago truncatula39.2425.189.34197forward
CNT30440472Helianthus annuusAegilops tauschii38.6532.6187.63194forward
CNT30608730Helianthus annuusGossypium raimondii50.442.1783.4253forward
CNT30228831Helianthus annuusAnanas comosus38.0560.8383.25191forward
CNT30651330Helianthus annuusRosa chinensis48.4155.183.13243forward
CNT30355521Helianthus annuusLactuca sativa40.4421.2889.66203forward
CNT30644454Helianthus annuusCannabis sativa35.8686.9688.89180forward
CNT30148140Helianthus annuusBrachypodium distachyon35.6647.1185.47179forward
CNT30594546Helianthus annuusEragrostis curvula45.2247.9986.78227forward
CNT30176038Helianthus annuusVigna angularis39.645084.92199forward
CNT30724029Helianthus annuusLupinus angustifolius101.7947.4580.23511forward
CNT3050294Helianthus annuusCucumis sativus50.241.1183.73252forward

Expression of CNT30203420

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MDRRGLSDGRFGSLIWSRASRRVGPLYQSRFVDLSIMLSPSKPEIGTNGILSGL*

>peptide 2 (71 aa)
MMMTCEVKLAAPLAGSSLELDATYPRFRSLTATFLTLNPTLSPGRASCSASWCISTDLTSVVNPDGPKGFV*

Sequence

>CNT30203420
GGCAATGTGGGAAGTGTGGCAATCGAGAACTGGAGCGTAACCGTTTCCGATCTGACCAGGGTGGTTCATGATGATGACTTGTGAGGTGAAACTGGCGGCG
CCCTTAGCGGGGTCGTCCTTGGAGTTGGATGCGACATACCCACGTTTCAGATCCTTAACCGCAACGTTCTTGACGTTGAACCCAACGTTGTCACCGGGGA
GAGCTTCTTGTAGCGCTTCATGGTGCATCTCGACAGACTTGACTTCAGTGGTCAACCCAGATGGACCGAAGGGGTTTGTCTGATGGCCGTTTTGGCTCGT
TGATCTGGTCAAGAGCTTCGAGAAGAGTTGGGCCCTTGTACCAGTCGAGGTTTGTCGACCTCTCAATCATGTTGTCACCCTCGAAACCGGAGATTGGAAC
GAACGGGATTTTGTCGGGGTTGTAACCGACCTTTTTCAAGTAAGAAGAAACTTCCTTCACGATTTCATCGTATCTTGCCTTCGAGTACTTAGGAGTTGTT
GC