Detailed information on CNT30368495


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 6e-152

BLAST vs NONCODE:
NONBNAT001751, E-value = 7e-180

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691950Sorghum bicolorOryza sativa71.5446.2991.08729forward
CNT30672814Sorghum bicolorSetaria viridis69.3866.3292.22707forward
CNT30521187Sorghum bicolorSetaria italica72.1356.4192.52735forward
CNT30639730Sorghum bicolorNymphaea colorata58.1964.5383.31593forward
CNT30371709Sorghum bicolorArabidopsis thaliana59.6794.4187.34608forward
CNT30618377Sorghum bicolorSesamum indicum37.39102.1483.46381forward
CNT30274113Sorghum bicolorChenopodium quinoa46.0375.1685.71469forward
CNT30727585Sorghum bicolorCorchorus capsularis71.5454.0886.83729forward
CNT30629525Sorghum bicolorVigna unguiculata37.8889.7784.72386forward
CNT30194937Sorghum bicolorPisum sativum72.1373.5784.76735forward
CNT30712097Sorghum bicolorGlycine max41.8135.7186.85426forward
CNT30224132Sorghum bicolorHordeum vulgare42.262.6888.84430forward
CNT30541590Sorghum bicolorBrassica napus71.3462.5185.01727forward
CNT30233904Sorghum bicolorBrassica oleracea71.3479.2884.73727forward
CNT30173274Sorghum bicolorTrifolium pratense72.0354.5785.42734forward
CNT30146334Sorghum bicolorMedicago truncatula61.1462.6887623forward
CNT30440472Sorghum bicolorAegilops tauschii32.4855.6391.24331forward
CNT30246955Sorghum bicolorAvena sativa71.9341.5389.77733forward
CNT30665783Sorghum bicolorTriticum dicoccoides71.9380.4685.13733forward
CNT3059230Sorghum bicolorArabidopsis lyrata71.3460.4886.24727forward
CNT3077042Sorghum bicolorBrassica juncea71.3460.3885.56727forward
CNT30611975Sorghum bicolorArabis alpina69.9753.4184.71713forward
CNT30598015Sorghum bicolorFraxinus excelsior24.635087.65251forward
CNT30449495Sorghum bicolorSaccharum spontaneum101.8685.2990.661038forward
CNT30132437Sorghum bicolorLolium perenne71.9360.9886.22733forward
CNT3011166Sorghum bicolorZea mays72.3352.1291.32737forward
CNT30228831Sorghum bicolorAnanas comosus2168.1589.72214forward
CNT30127375Sorghum bicolorCorymbia citriodora54.7610086.02558forward
CNT30684514Sorghum bicolorTriticum urartu41.2254.1988.81420forward
CNT30350898Sorghum bicolorEragrostis tef71.9365.890.04733forward
CNT30151899Sorghum bicolorPrunus persica33.1730.6486.98338forward
CNT30427756Sorghum bicolorPapaver somniferum71.5455.985.32729forward
CNT3024428Sorghum bicolorPopulus trichocarpa61.4382.0485.62626forward
CNT30148140Sorghum bicolorBrachypodium distachyon36.4197.6391.37371forward
CNT30101006Sorghum bicolorOryza rufipogon39.1657.3392.98399forward
CNT30496833Sorghum bicolorDigitaria exilis72.6266.9192.3740forward
CNT30594462Sorghum bicolorEragrostis curvula71.9362.9790.04733forward
CNT30603788Sorghum bicolorOryza punctata71.9362.2291.41733forward
CNT30176122Sorghum bicolorVigna angularis70.4663.4382.45718forward
CNT30724026Sorghum bicolorLupinus angustifolius72.0350.9785.97734forward

Expression of CNT30368495

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRFRSFTATFLTLKPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGTIFTIPASPFLRNLGSFSSSLPDRLSILVTSSANLTAMCEVWQSSTGA*

>peptide 3 (30 aa)
RANHQLFRNSKISSEKHCNTGSNKNSTIYG*

Sequence

>CNT30368495
GACGAGCGAATCATCAGCTATTTAGAAACAGCAAAATAAGTTCAGAAAAACACTGCAACACCGGTAGTAACAAAAACTCAACCATATATGGCTAACACCC
GTTGTTCGATACAAAAATAACAGAATTGAGTCTCAACAGCACCCTGGTTTTAGCAAAAATAACAGTACTAGATGGACCAGACAAACATTGCCAGCACAGT
TTAGTTGCTCAAGCGATAACAGCAACAGCAATGACGATATATTTTTGAAGTTTCAACTAGGTATCCCACGAGCAAACAGAGGCGCATCATTTCTTCTTGG
CGGCAGCCTTGGTCACCTTGGCTCCAGTTGGGTCCTTCTTCTCCACACTCTTGATGACTCCAACAGCCACCGTTTGCCTCATGTCCCGGACAGCAAAGCG
ACCAAGAGGAGGATACTCAGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAACCATCTTCACCATACCAGCATCACCGTTCTTGAGGAATTTGGGCTCC
TTCTCAAGCTCCTTGCCAGATCGCCTATCAATCTTGGTAACCAGCTCAGCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCCAGCACTGGGGCGTAGC
CATTGCCAATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTAGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACATACCC
ACGCTTCAGATCCTTCACAGCAACATTCTTAACATTGAAGCCAACATTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCGACAGACTTA
ACCTCAGTTGTAAGGCCACTAGGACCAAAGGTAACAACCATACCAGGTTTGATGATACCAGTCTCAACACGCCCGACAGGAACAGTTCCAATACCACCAA
TCTTGTACACGTCCTGAAGGGGGAGACGCAGTGGCTTGTCTGAAGGCCTCTTTGGCTCATTGATCAAGTCCAGAGCCTCAAGCAGGGTTGGGCCCTTGTA
CCAGTCAAGGTTGGTGGAC