Detailed information on CNT30541590


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316757Brassica napusCorylus avellana65.1863.2787.34758forward
CNT30518094Brassica napusJuglans regia74.2992.3183.45864forward
CNT30371709Brassica napusArabidopsis thaliana55.3710093.32644forward
CNT30274113Brassica napusChenopodium quinoa40.4175.3286.38470forward
CNT30287202Brassica napusTriticum aestivum36.7259.3987.59427forward
CNT30224132Brassica napusHordeum vulgare36.3761.6684.16423forward
CNT30564256Brassica napusActinidia chinensis52.1952.1586.16607forward
CNT30238010Brassica napusBrassica oleracea10095.0297.511163forward
CNT3059230Brassica napusArabidopsis lyrata90.287.2789.421049forward
CNT30598511Brassica napusFraxinus excelsior40.5872.585.81472forward
CNT30449495Brassica napusSaccharum spontaneum73.7770.584.85858forward
CNT30132437Brassica napusLolium perenne75.4973.0483.83878forward
CNT3011166Brassica napusZea mays75.4962.0984.17878forward
CNT30685098Brassica napusTriticum urartu38.7830.6886.47451forward
CNT30368495Brassica napusSorghum bicolor62.5171.3485.01727forward
CNT30496962Brassica napusDigitaria exilis75.4978.1186.56878forward
CNT30594443Brassica napusEragrostis curvula75.5875.7186.12879forward

Expression of CNT30541590

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTIGLVGVIFTIPASPFFKNLGSFSISLPERLSILVRISENLTAMWEVWQSRTGA*

>peptide 2 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPEGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT30541590
TTAACCGCAGGAACGACATACCATATTCATTATAAAGAGAGCATCCAAAATAGTTCAGAATCCGAAAGCAAAACAAAGTAAAAAAGAAGGAAGCTAGAGT
AATGAGTAGCTTCACCACCTCCGATCAAGAACCTAGTTAAGTGAACAAAGCTCTGACGGAGAAGTAACGAAGCTGCAACACAGACAAGCGGCCAAATACA
AAACTAATGTAACCAAAAAACTAAAATTGTCTTTCCATTCAACTGCGGATGATTGAGTTTTCCTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAGC
CTTGGTCACCTTGGCTCCGGTTGGGTCCTTCTTGTCAACGCTCTTGATGACGCCGACTGCAACAGTCTGCCTCATGTCCCTCACGGCGAAACGTCCAAGA
GGTGGGTACTCAGAGAAGGTCTCAACAACCATTGGCTTGGTTGGAGTCATCTTCACCATACCAGCATCACCATTCTTCAAGAACTTGGGCTCCTTCTCGA
TCTCTTTACCAGAACGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACGGCAATGTGGGAAGTGTGGCAGTCAAGAACTGGTGCGTAACCGTTACC
AATCTGACCGGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTAGCAGCACCCTTAGCTGGGTCATCTTTGGAGTTGGATGCAACGTACCCACGCTTG
AGATCCTTGACAGCAACATTCTTGACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATCTCAACAGACTTAACCTCAG
TGGTCAACCCTGAAGGAGCAAAGGTGACAACCATACCAGGCTTGAGCATACCGGTTTCAACACGACCCACTGGCACCGTTCCAATACCACCAATCTTGTA
GACATCCTGAAGTGGGAGACGGAGGGGCTTGTCTGAGGGCCTCTTGGGCTCGTTGATCTGGTCAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCA
AGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGGGACGAATGGGATTTTGTCCGGGTTGTACCCAACCTTCTTCAAGTAGGAAG
ACACCTCCTTGATAATCTCATCGTACCTAGCCTTGGAGTACTTAGGGGTAGTAGCATCCATCT