Detailed information on CNT30355697


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 6e-120

BLAST vs NONCODE:
NONBNAT003157, E-value = 2e-127

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546678Lactuca sativaIpomoea triloba54.5733.3185.71448forward
CNT30712097Lactuca sativaGlycine max51.2835.2985.04421forward
CNT30121467Lactuca sativaPhyscomitrium patens55.1868.3381.02453forward
CNT30296842Lactuca sativaTriticum aestivum34.5940.7588.03284forward
CNT30224132Lactuca sativaHordeum vulgare50.360.281.6413forward
CNT3076676Lactuca sativaBrassica juncea93.367.2585.12766forward
CNT30350899Lactuca sativaEragrostis tef56.1541.3185.9461forward
CNT30423483Lactuca sativaPapaver somniferum85.0268.0384.81698forward
CNT3024315Lactuca sativaPopulus trichocarpa57.6161.9983.72473forward
CNT30148140Lactuca sativaBrachypodium distachyon43.8594.7485360forward

Expression of CNT30355697

Peptides detected in this lncRNA

>peptide 1 (99 aa)
SNPNRQKIKRLDHQNTTPIISLDTLLGCGLGHLSSSRVLLVNTLDHTNSNSLTHVPHSKPSKRWVLCESLHHHRLGRHHLNHTCITILQKLGLLLKLLS*

>peptide 2 (47 aa)
MMITWEVKLAAPLAGSSLEFEATYPRLISFTATFLTLNPTLSQPYQA*

>peptide 3 (62 aa)
MSLTANLPRGGYSAKVSTTIGLVGIILTIPASPFFKNLGSFSSSFPDRLSILVNSSWNLTAM*

>peptide 4 (30 aa)
MLSPSNPEIGTNGILSGLYPTFFKYEDTSFT

Sequence

>CNT30355697
TAGTAATCCAAACAGACAGAAAATAAAAAGACTCGATCACCAAAACACAACACCTATCATATCACTTGACACCCTTCTTGGCTGCGGCCTTGGTCACCTT
AGCTCCAGTCGGGTCCTTCTTGTCAACACTCTTGATCACACCAACAGCAACAGTCTGACGCATGTCCCTCACAGCAAACCTTCCAAGAGGTGGGTACTCT
GCGAAAGTCTCCACCACCATAGGCTTGGTCGGCATCATCTTAACCATACCTGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCTTTCCTG
ATCGTCTGTCAATCTTGGTCAACAGCTCTTGGAACTTAACAGCAATGTGAGAAGTGTGGCAATCCAACACTGGAGCATAACCATTTCCGATCTGACCAGG
GTGGTTCATGATGATAACCTGGGAAGTGAAACTGGCAGCACCCTTAGCAGGATCATCCTTGGAGTTTGAGGCAACATACCCACGCTTGATATCCTTCACA
GCAACATTCTTAACATTGAACCCAACATTGTCACAACCATACCAGGCTTGATGATACCTGTCTCAACACGTCCCACTGGCACAGTTCCAATACCACCGAT
CTTGTAAACATCCTGAAGTGGTAGACGGAGTGGCTTGTCTGTGGGTCTCTTTGGCTCGTTGATCTGGTCAAGAGCTTCAAGAAGGGTTGGTCCCTTGTAC
CAGTCAAGGTTGGTTGACCTCTCAATCATGTTGTCACCTTCGAATCCAGAGATTGGAACGAATGGGATTTTGTCTGGGTTGTATCCGACCTTCTTCAAGT
ATGAAGACACTTCCTTCACGA