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Detailed information on CNT3024315


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 7e-142

BLAST vs NONCODE:
NONGMAT001702, E-value = 2e-158

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672814Populus trichocarpaSetaria viridis83.2259.5785.67635forward
CNT30535563Populus trichocarpaEucalyptus grandis76.9371.9485.01587forward
CNT30316757Populus trichocarpaCorylus avellana71.0445.2487.64542forward
CNT30546799Populus trichocarpaIpomoea triloba76.2847.3984.02582forward
CNT30518094Populus trichocarpaJuglans regia88.271.984.99673forward
CNT30377782Populus trichocarpaArabidopsis thaliana83.2262.8782.99635forward
CNT30618435Populus trichocarpaSesamum indicum37.3558.0485.96285forward
CNT30274113Populus trichocarpaChenopodium quinoa52.9564.7484.9404forward
CNT3021232Populus trichocarpaCitrullus lanatus82.9651.1383.89633forward
CNT30629525Populus trichocarpaVigna unguiculata50.5989.7784.72386forward
CNT30194937Populus trichocarpaPisum sativum56.8843.4486.87434forward
CNT30505987Populus trichocarpaNicotiana attenuata25.8259.8887.82197forward
CNT30224132Populus trichocarpaHordeum vulgare38.7943.1585.47296forward
CNT30564256Populus trichocarpaActinidia chinensis66.7143.7385.85509forward
CNT30541587Populus trichocarpaBrassica napus90.4358.6782.61690forward
CNT30509820Populus trichocarpaSolanum lycopersicum29.3610086.61224forward
CNT30173274Populus trichocarpaTrifolium pratense88.4750.1983.26675forward
CNT30146334Populus trichocarpaMedicago truncatula80.661.8783.9615forward
CNT30310418Populus trichocarpaCamelina sativa81.1353.3683.2619forward
CNT3059230Populus trichocarpaArabidopsis lyrata81.1351.583.84619forward
CNT3077051Populus trichocarpaBrassica juncea90.4359.7982.46690forward
CNT30608730Populus trichocarpaGossypium raimondii58.0673.8385.33443forward
CNT30228831Populus trichocarpaAnanas comosus26.2163.6987.5200forward
CNT30624959Populus trichocarpaDaucus carota39.9789.7182.95305forward
CNT30480841Populus trichocarpaArabidopsis halleri45.4855.8883.29347forward
CNT30355697Populus trichocarpaLactuca sativa61.9957.6183.72473forward
CNT30151899Populus trichocarpaPrunus persica40.3727.9287.01308forward
CNT30427756Populus trichocarpaPapaver somniferum79.8246.785.22609forward
CNT3052982Populus trichocarpaAmborella trichopoda37.7522.0285.07288forward
CNT3037774Populus trichocarpaCucumis melo41.1540.6287.9314forward
CNT30148140Populus trichocarpaBrachypodium distachyon45.6191.5885.06348forward
CNT30496874Populus trichocarpaDigitaria exilis83.2256.6585.2635forward
CNT30113122Populus trichocarpaFicus carica51.947.7186.11396forward
CNT30724026Populus trichocarpaLupinus angustifolius83.3644.1786.01636forward
CNT3050294Populus trichocarpaCucumis sativus51.5164.1184.99393forward

Expression of CNT3024315

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMITWEVKFAASLAGSSFEFEATKPRFRSFTATFLTLNPTLSPGRASWSASWCISTDLTSVVSPVGPKVTIVPGLMTPVSTRPTGTVPIPPILYTS*

>peptide 2 (43 aa)
MGFVGIILIIPASPFFRNLGSFSNSFPDRLSILVRISANLTAM*

Sequence

>CNT3024315
AACCAATGAATAGACTAGTGACAAGAACCCACTCTTGATTTATATTATAGCATCTAGTTGCATCATCCTGCACAGTTCACTTGCCACCCTTCTTGGCAGC
AGATTTGGTCACCTTAGCACTAGAAGCATCCTTTTTCTCCACGTTCTTGATCACTCCCACAGCAACAGTCTGGCGCATATCCCTCACAGCAAAACGTCCA
AGTGGGGGATACTCTGAGAAAGTCTCCACCACCATGGGCTTCGTGGGAATCATCTTAATCATACCTGCATCACCGTTCTTCAGAAATTTAGGTTCCTTCT
CCAACTCCTTCCCTGATCGCCTGTCAATCTTGGTGAGGATCTCAGCAAATTTGACAGCAATGTGACAGGTGTGGCAGTCAAGAACTGGGGCATAACCATT
TCCAATCTGCCCAGGATGGTTCATGATGATCACCTGGGAGGTGAAGTTCGCAGCCTCCTTGGCGGGATCATCCTTCGAGTTTGAGGCAACAAAACCACGC
TTCAGATCCTTCACGGCAACATTCTTAACATTAAATCCAACATTGTCACCGGGAAGAGCCTCTTGGAGTGCTTCGTGGTGCATCTCAACAGACTTAACTT
CAGTAGTTAGTCCAGTTGGCCCGAAAGTGACAATCGTACCAGGCTTGATGACACCAGTTTCCACACGACCAACTGGGACCGTTCCAATACCACCAATCTT
GTACACGTCCTGAAGGGGGAGACGGAGGGGCTTGTCCGAGGGCCTCTTGGGCTCCTGGATCTG