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Detailed information on CNT30310418


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639730Camelina sativaNymphaea colorata51.2164.6484.51594forward
CNT30535563Camelina sativaEucalyptus grandis68.0296.6985.68789forward
CNT30316757Camelina sativaCorylus avellana65.3463.2787.6758forward
CNT30518094Camelina sativaJuglans regia74.4892.3185.07864forward
CNT3021232Camelina sativaCitrullus lanatus72.4167.8584.52840forward
CNT30727590Camelina sativaCorchorus capsularis74.7463.9986.62867forward
CNT30380230Camelina sativaManihot esculenta75.6936.1985.65878forward
CNT30525464Camelina sativaPhaseolus vulgaris49.31101.2480.77572forward
CNT30712097Camelina sativaGlycine max36.7235.7184.51426forward
CNT30224132Camelina sativaHordeum vulgare36.7262.184.51426forward
CNT30564256Camelina sativaActinidia chinensis53.0252.8487.15615forward
CNT3084148Camelina sativaVigna radiata48.7934.7583.92566forward
CNT30246955Camelina sativaAvena sativa75.5249.6385.84876forward
CNT30665783Camelina sativaTriticum dicoccoides71.2990.7883.43827forward
CNT30132437Camelina sativaLolium perenne75.5272.8884.82876forward
CNT30608730Camelina sativaGossypium raimondii38.6274.6783.26448forward
CNT30647369Camelina sativaRosa chinensis35.1745.0385.29408forward
CNT30127375Camelina sativaCorymbia citriodora45.0993.7384.13523forward
CNT30355521Camelina sativaLactuca sativa61.7275.0587.43716forward
CNT3024315Camelina sativaPopulus trichocarpa53.3681.1383.2619forward
CNT30148140Camelina sativaBrachypodium distachyon27.0782.6388.22314forward
CNT30594443Camelina sativaEragrostis curvula75.675.5486.55877forward
CNT30176122Camelina sativaVigna angularis73.3675.1882.02851forward
CNT30724026Camelina sativaLupinus angustifolius72.1658.1385.9837forward

Expression of CNT30310418

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMITWEVKLAAPLAGSSLELEATYPLLRSFTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIKPVSTRPTGTVPIPPIL*

>peptide 2 (98 aa)
MGVHFAPFLTAALVTLAPVGSFLSTLLMTPTATVCLMSLTAKRPNGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVKISENLTAM*

Sequence

>CNT30310418
TCCGACAAAGATAAGAGAATAAAATCCGCAGGAATGTCACAATAATCCATAAAAGGTTAAATTGGAAACACAATTTAAAGGAAAAAAAACAAAAAGCTCG
GATGCGCTAAGTAGCTCCGCCACCTCCGATCAAGAACCCAGTTCCGCGAACAACGCTCTGACGGAGAAGTAACGAAGCTGTAACACAAACAAGCGACCAA
ATACCAAACTAAAGGAAACAAACTAACAACATTCTTTGATTCATCTGCGGATAGAGTTTTGATAATGGGAGTTCACTTCGCACCCTTCTTGACTGCAGCC
TTGGTAACCTTGGCTCCAGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCGACTGCAACAGTCTGCCTCATGTCCCTCACGGCAAAACGTCCCAACG
GTGGGTACTCGGAGAAAGTCTCAACAACCATGGGCTTGGTAGGAGTCATCTTCACCATACCGGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAAT
CTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGAGAACTTGACTGCAATGTGAGAGGTGTGGCAATCGAGGACTGGGGCGTAACCGTTTCCA
ATCTGACCAGGGTGGTTCATGATGATAACCTGGGAGGTGAAGTTGGCTGCTCCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACATACCCTCTCTTAA
GATCCTTCACAGCAACATTCTTAACGTTGAACCCAACATTGTCACCAGGAAGCGCCTCAAGAAGAGACTCGTGGTGCATCTCAACAGACTTGACCTCAGT
GGTCAACCCTGTGGGGGCAAAGGTCACAACCATACCGGGCTTGATCAAACCAGTCTCAACACGTCCCACTGGCACCGTTCCAATACCACCAATCTTGTAG
ACATCCTGAAGTGGGAGACGAAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAA
GGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAATCCAGAGATGGGCACAAACGGGATTTTGTCAGGGTTGTACCCAACCTTCTTCAGGTAGGAAGA
CACCTCCTTGATGATTTCATCGTACCTAGCCTTGGAGTACTTGGGGGTTGTGGCATCCAT