CANTATAdb - search

Detailed information on CNT30712097

BLAST search results

BLAST vs Swiss-Prot:
sp|P25698|EF1A_SOYBN, E-value = 1e-123

BLAST vs NONCODE:
NONGMAT001703, E-value = 3e-142

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691950	Glycine max	Oryza sativa	35.71	27.05	85.21	426	forward
CNT30673332	Glycine max	Setaria viridis	35.71	51.08	85.92	426	forward
CNT30521187	Glycine max	Setaria italica	35.71	32.69	85.68	426	forward
CNT30639730	Glycine max	Nymphaea colorata	28.83	37.43	86.05	344	forward
CNT30535563	Glycine max	Eucalyptus grandis	29.84	43.63	86.8	356	forward
CNT30316757	Glycine max	Corylus avellana	28.83	28.71	88.37	344	forward
CNT30546678	Glycine max	Ipomoea triloba	36.46	32.34	85.75	435	forward
CNT30518094	Glycine max	Juglans regia	35.88	45.73	82.71	428	forward
CNT30377782	Glycine max	Arabidopsis thaliana	36.46	43.07	84.37	435	forward
CNT30618377	Glycine max	Sesamum indicum	21.29	68.1	88.19	254	forward
CNT3021028	Glycine max	Citrullus lanatus	35.62	34.22	86.59	425	forward
CNT30727585	Glycine max	Corchorus capsularis	35.37	31.31	85.55	422	forward
CNT30380230	Glycine max	Manihot esculenta	35.62	17.52	85.88	425	forward
CNT30194937	Glycine max	Pisum sativum	35.12	41.94	88.07	419	forward
CNT30160120	Glycine max	Pistacia vera	34.37	32.98	87.56	410	forward
CNT3093993	Glycine max	Solanum tuberosum	28.33	64.75	89.05	338	forward
CNT30288144	Glycine max	Triticum aestivum	28.08	90.54	86.57	335	forward
CNT30224132	Glycine max	Hordeum vulgare	23.81	41.4	85.92	284	forward
CNT30386294	Glycine max	Triticum turgidum	28.08	91.03	86.57	335	forward
CNT30562819	Glycine max	Actinidia chinensis	27.66	65.48	87.88	330	forward
CNT30540422	Glycine max	Brassica napus	36.55	63.74	84.86	436	forward
CNT30233993	Glycine max	Brassica oleracea	36.46	40.5	85.06	435	forward
CNT30173274	Glycine max	Trifolium pratense	35.12	31.15	87.35	419	forward
CNT30146334	Glycine max	Medicago truncatula	35.29	42.35	87.17	421	forward
CNT30440472	Glycine max	Aegilops tauschii	27.16	54.45	85.49	324	forward
CNT30247994	Glycine max	Avena sativa	49.04	39.53	82.56	585	forward
CNT30658093	Glycine max	Triticum dicoccoides	28.08	76.66	86.57	335	forward
CNT30310418	Glycine max	Camelina sativa	35.71	36.72	84.51	426	forward
CNT3059455	Glycine max	Arabidopsis lyrata	36.38	34.09	84.56	434	forward
CNT3077051	Glycine max	Brassica juncea	36.38	37.61	85.02	434	forward
CNT30611975	Glycine max	Arabis alpina	24.98	22.32	89.6	298	forward
CNT30598015	Glycine max	Fraxinus excelsior	20.7	49.2	88.26	247	forward
CNT30449495	Glycine max	Saccharum spontaneum	35.71	35	85.45	426	forward
CNT3011166	Glycine max	Zea mays	35.37	29.84	85.31	422	forward
CNT30608684	Glycine max	Gossypium raimondii	28.08	79.57	85.67	335	forward
CNT3067093	Glycine max	Leersia perrieri	20.03	53.47	86.61	239	forward
CNT30647369	Glycine max	Rosa chinensis	31.52	41.5	86.44	376	forward
CNT30127375	Glycine max	Corymbia citriodora	26.74	57.17	85.89	319	forward
CNT30721809	Glycine max	Triticum spelta	21.54	17.03	85.99	257	forward
CNT30350899	Glycine max	Eragrostis tef	35.71	38.17	86.85	426	forward
CNT30480842	Glycine max	Arabidopsis halleri	23.05	56.47	85.09	275	forward
CNT30368495	Glycine max	Sorghum bicolor	35.71	41.81	86.85	426	forward
CNT30355697	Glycine max	Lactuca sativa	35.29	51.28	85.04	421	forward
CNT30426682	Glycine max	Papaver somniferum	35.12	31.69	84.49	419	forward
CNT30706337	Glycine max	Prunus avium	36.55	37.39	85.32	436	forward
CNT30645139	Glycine max	Cannabis sativa	19.03	82.25	87.67	227	forward
CNT3024428	Glycine max	Populus trichocarpa	36.55	57.14	86.24	436	forward
CNT30120727	Glycine max	Citrus clementina	28.16	61.09	84.82	336	forward
CNT30148140	Glycine max	Brachypodium distachyon	29.34	92.11	86.29	350	forward
CNT30101006	Glycine max	Oryza rufipogon	29.59	50.72	85.27	353	forward
CNT30585575	Glycine max	Echinochloa crusgalli	18.69	43.64	88.34	223	forward
CNT30496874	Glycine max	Digitaria exilis	35.71	38	84.74	426	forward
CNT30594462	Glycine max	Eragrostis curvula	35.71	36.6	87.56	426	forward
CNT30603788	Glycine max	Oryza punctata	35.71	36.16	85.21	426	forward
CNT30724026	Glycine max	Lupinus angustifolius	35.29	29.24	88.6	421	forward
CNT3050518	Glycine max	Cucumis sativus	28.33	54.43	86.69	338	forward

Expression of CNT30712097

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MSRRINNCAIILCCFKLPQSNINGDSSFTLSLKFVQHPGILERPLVHLSSFLLKPLNNTLVNASKLVNQVTSGSGFPRVDMANDHNTDVNLFLTHL

>peptide 2 (61 aa)
GFRQTQHIKTQINKSNFATVDQEPSSGNNSCEMMVETSNFVRKTSYLEKKTQEYRKETNIY*

>peptide 3 (62 aa)
MSLTANLPSGGYSEKVSTTMGLVGIILTKPASPFFKNLGSFSSSLPDRLSILVMSSANLTAM*

>peptide 4 (44 aa)
MVIPLSRSALSLSSTQAYLKDLLFISAASFSNLSITRLSMPPSL*

Sequence

>CNT30712097
AGGGGTTCCGACAAACACAACACATTAAAACACAGATAAATAAAAGCAATTTTGCCACCGTCGATCAAGAACCCAGTTCTGGGAACAACAGTTGCGAGAT
GATGGTGGAGACTTCAAACTTTGTCCGAAAAACAAGCTACCTAGAAAAGAAGACACAAGAGTACAGAAAAGAAACCAACATTTATTGATCCTTCTTCTCA
ACGTTCTTGATGACTCCCACAGCAACAGTTTGACGCATGTCCCTAACAGCAAACCTACCAAGTGGAGGATACTCGGAGAAAGTTTCAACAACCATGGGTT
TGGTTGGAATCATCTTAACAAAACCAGCATCACCGTTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCTTTGCCGGATCGCCTGTCAATCTTGGTCATGAG
TTCAGCAAACTTGACAGCAATGTGAGAAGTGTGGCAGTCGAGGACAGGGGCATAGCCATTTCCAATCTGACCAGGGTGGTTCATGATGATGACTTGGGCT
GTGAAGTTAGCAGCCTCCTTTGCAGGGTCATCCTTTGAGTTTGAGGCAACATAACCACGCTTCAAATCCTTAACAGCAACATTCTTAACATTGAATCCCA
CATTGTCACCAGGATGTGCCTCTGGGAAGCCTGAGGGGCTTGTCAGAGGGCCTCTTGGGCTCACTAATCTGGTCAAGTGCATCAAGCAGAGTTGGACCCT
TGTACCAGTCAAGGTTTGTGGACCTCTCAATCATGTTGTCTCCCTCAAAACCAGAGATAGGAACAAAAGGAATCTTGTCAGGGTTGTATCCTACTTTCTT
CAAGTAGGAAGAGACTTCCTTCACAATTTCATCATACCTGGCCTTGGAATACTTGGCACAGTCAGCTTGGGATGTCCCAGTAATCATATTCTTAATGAAA
TCCCTATGTCCAGGCGCATCAATAACTGTGCAATAATACTTTGTTGTTTCAAACTTCCACAAAGCAATATCAATGGTGATTCCTCTTTCACGCTCAGCCT
TAAGTTTGTCCAGCACCCAGGCATACTTGAAAGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCAAACCTCTCAATAACACGCTTGTCAATGCCTCCAAG
CTTGTAAATCAGGTGACCAGTGGTAGTGGATTTCCCAGAGTCGACATGGCCAATGACCACAATACTGATGTGAACCTTTTCCTTACCCATCTT