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Detailed information on CNT30594462


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677701Eragrostis curvulaSetaria viridis57.0496.9392.02664forward
CNT30639730Eragrostis curvulaNymphaea colorata46.6559.0985.08543forward
CNT30377782Eragrostis curvulaArabidopsis thaliana58.6867.6286.38683forward
CNT30274113Eragrostis curvulaChenopodium quinoa36.8668.7585.78429forward
CNT30525464Eragrostis curvulaPhaseolus vulgaris50.09103.1982.33583forward
CNT30629525Eragrostis curvulaVigna unguiculata33.1689.7787.56386forward
CNT30712097Eragrostis curvulaGlycine max36.635.7187.56426forward
CNT30224132Eragrostis curvulaHordeum vulgare34.8859.1889.9406forward
CNT30564256Eragrostis curvulaActinidia chinensis52.2352.2387.17608forward
CNT30146334Eragrostis curvulaMedicago truncatula53.5262.6886.2623forward
CNT30440628Eragrostis curvulaAegilops tauschii31.149.3290.33362forward
CNT30665783Eragrostis curvulaTriticum dicoccoides68.4787.4987.83797forward
CNT3059458Eragrostis curvulaArabidopsis lyrata81.3675.487.01947forward
CNT3074067Eragrostis curvulaBrassica juncea81.3693.2186.59947forward
CNT30449969Eragrostis curvulaSaccharum spontaneum81.6275.2891.26950forward
CNT30608730Eragrostis curvulaGossypium raimondii38.4974.6786.38448forward
CNT30647369Eragrostis curvulaRosa chinensis36.0846.3684.52420forward
CNT30368495Eragrostis curvulaSorghum bicolor62.9771.9390.04733forward
CNT3024428Eragrostis curvulaPopulus trichocarpa54.5583.2285.35635forward
CNT30148140Eragrostis curvulaBrachypodium distachyon32.3999.2190.19377forward
CNT30101006Eragrostis curvulaOryza rufipogon34.3657.4792.5400forward
CNT30176122Eragrostis curvulaVigna angularis66.1568.0282.47770forward
CNT30113122Eragrostis curvulaFicus carica41.4958.1985.92483forward

Expression of CNT30594462

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLSPSKPEMGTKGILSGLVDLSIMLSPSKPEMGTKGILSGL*

>peptide 2 (53 aa)
MGLVGIILTIPASPFFRNLGSFSSSLPDRLSILVWSSANLTAMCEVWQSSTGA*

>peptide 3 (54 aa)
MVHLNRLDLSCQTAGTKGNNHTRLEDTSLHTAHGHSSNTTNLVHILKGETQGLV*

>peptide 4 (96 aa)
MMMTWEVKLAASLAGSSLEFEATLPRLISFTATFFTLKPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLRTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30594462
ATATAAAAACCATAATACTCGACCACAGCACAAATAAACGATAAACTGGACATCATTAAAGACCATAACAGGCGAATCATAGTTCAGTCTCAGCATCCAC
TGCTCAAATAACGACAGCATTTTAAAGACGGACAAAGCACGAACTGAATGACACTAAACAAAACTTAAACAGGCACTACACCCCATAGAAGGGGGCCATT
CATCAAACGCCTCATTTCTTCTTGGCAGCGGCCTTGGTAACCTTGGCACCGGTGGGGTCCTTCTTCTCCACGCTCTTGATGACACCAACAGCAACAGTTT
GCCTCATGTCCCGCACAGCGAACCGACCAAGAGGGGGGTACTGAGAGAAGGTCTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATACCAGCATC
ACCGTTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTGCCAGATCGTCTGTCGATCTTGGTCTGGAGCTCAGCAAACTTGACAGCAATGTGCGAGGTG
TGGCAGTCAAGCACTGGGGCATAGCCATTGCCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCCGCCTCCTTGGCAGGGTCAT
CCTTGGAGTTTGAGGCAACGTTACCACGCTTGATATCCTTCACAGCAACATTCTTCACGTTGAAGCCCACATTGTCACCAGGAAGAGCCTCCTGGAGAGC
CTCATGGTGCATCTCAACAGACTTGACCTCAGTTGTCAGACCGCTGGGACCAAAGGTAACAACCATACCAGGCTTGAGGACACCAGTCTCCACACGGCCC
ACGGGCACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAGGGCCTCTTGGGCTCGTTGATCTGGTCAAGAG
CCTCCAGCAGAGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGGCACGAAGGGGATCTTGTC
AGGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGGCACGAAGGGGATCTTGTCAGGGTTGTAGCCGACCTTCTTCAGGTAGGAA
GAGACTTCCTTCACGATCTCTTCATAACGGGCCTTCGAGTACTTGGGAGTGGTGGCATCCATCT