Detailed information on CNT30546678


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONBNAT003157, E-value = 3e-136

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629687Ipomoea trilobaVigna unguiculata22.915.5988.96308forward
CNT30503993Ipomoea trilobaNicotiana attenuata17.5585.8291.53236forward
CNT30712097Ipomoea trilobaGlycine max32.3436.4685.75435forward
CNT30287202Ipomoea trilobaTriticum aestivum34.865.0983.97468forward
CNT30224132Ipomoea trilobaHordeum vulgare3160.7985.85417forward
CNT30540422Ipomoea trilobaBrassica napus37.2573.2586.23501forward
CNT30440472Ipomoea trilobaAegilops tauschii24.0154.2987.62323forward
CNT30598511Ipomoea trilobaFraxinus excelsior49.14101.5485.02661forward
CNT30647369Ipomoea trilobaRosa chinensis20.8931.0290.39281forward
CNT30350899Ipomoea trilobaEragrostis tef37.6245.3487.75506forward
CNT30355697Ipomoea trilobaLactuca sativa33.3154.5785.71448forward
CNT3024873Ipomoea trilobaPopulus trichocarpa25.2860.2887.65340forward
CNT30148140Ipomoea trilobaBrachypodium distachyon27.8198.4287.97374forward
CNT30101006Ipomoea trilobaOryza rufipogon30.0458.0588.61404forward
CNT30580076Ipomoea trilobaEchinochloa crusgalli28.8529.3386.86388forward
CNT30116111Ipomoea trilobaOryza nivara23.5736.2388.33317forward

Expression of CNT30546678

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MASWARGSCQEPQEELVPCTSQGWLTSQSCCHPQNQRWEQMESFQGCIPPSSCRMTLPSQFHHT*

>peptide 2 (86 aa)
MSLTAKRPSGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVKSSANLTAMWEVWQSSTGAYPLPICPGWFMMMT*

>peptide 3 (40 aa)
MGIINGIQKSSHHNPLSNQVKQKLLNYQNYGCRAYNGMSN*

>peptide 4 (45 aa)
MSRASRRVGPLYQSRLVDLSIMLSPSKPEMGTNGIFSGLYPTFFM*

Sequence

>CNT30546678
TAAATAAAACTTGACATTGAACACGTAAATTATAACTGTTCACCCACAAAAGTCTTGCCCACATCGAAAATAGCAAATGGGTATAATAAATGGCATCCAG
AAAAGCTCCCATCACAACCCATTAAGCAACCAAGTAAAACAAAAATTGCTCAACTATCAGAACTATGGTTGCAGGGCATATAATGGAATGAGTAACTAGA
ACCATATCAAAAAGTCTTACAAAGGGGCCATACCAGAGTCTAAAGTTTATCAAAATTTAAACAATTAAAGCAAATAAAACAGGCACTCCTTCAAAGGAGA
AATTCTCATTAAGAAACACATGCTCACTTCTTCTTCTGGGCAGCCTTGGTAACCTTGGCACCAGTTGGGTCCTTCTTGTCAACATTCTTGATAACACCAA
CTGCAACCGTTTGTCTCATGTCCCTCACAGCAAAACGACCAAGTGGTGGGTACTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTCAC
CATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCAGACCGTCTATCAATCTTGGTCAAAAGTTCAGCAAACTTGACTGCA
ATGTGGGAGGTGTGGCAGTCCAGCACCGGAGCATATCCATTACCGATCTGTCCAGGGTGGTTCATGATGATGACCTGAGAGGTGAAGCTAGCAGCTCCTT
TGGCTGGGTCATCCTTGGAGTTAGAGGCAACATAACCACGCTTAAGATCCTTCACAGCAACGTTCTTCACATTGAACCCAACATTGTCACCGGGAAGTGC
CTCCTGAAGGGCTTCGTGGTGCATTTCAACTGACTTAACTTCAGTGGTAAGACCAGAAGGTCCGAATGCAACATAACCACGCTTAAGATCCTTCACAGCA
ACGTTCTTCACATTGAACCCAACATTGTCACCGGGAAGTGCCTCCTGAAGGGCTTCGTGGTGCATTTCAACTGACTTAACTTCAGTGGTAAGACCAGAAG
GTCCGAATGTAACAACCATACCCGGCTTCAGGATACCAGTCTCCACACGACCCACAGGCACAGTACCAATACCACCAATCTTGTACACATCCTGAAGTGG
AAGTCGGAGGGGCTTGTCAGATGGCCTCTTGGGCTCGTGGATCATGTCAAGAGCCTCAAGAAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTTGACCTC
TCAATCATGTTGTCACCCTCAAAACCAGAGATGGGAACAAATGGAATCTTTTCAGGGTTGTATCCCACCTTCTTCATGTAGGATGACACTTCCTTCACAA
TTTCATCATACCTAGCCTTAGAGTATTTGGGGGTGGTGGCATCCA