Detailed information on CNT3050518


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 5e-106

BLAST vs NONCODE:
NONGMAT001702, E-value = 1e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639730Cucumis sativusNymphaea colorata52.9835.887.23329forward
CNT30618377Cucumis sativusSesamum indicum39.4565.6886.12245forward
CNT30381152Cucumis sativusManihot esculenta54.9144.3485.04341forward
CNT30194937Cucumis sativusPisum sativum50.5631.4387.58314forward
CNT30503993Cucumis sativusNicotiana attenuata30.669.0986.32190forward
CNT30712097Cucumis sativusGlycine max54.4328.3386.69338forward
CNT30160100Cucumis sativusPistacia vera57.8137.9184.96359forward
CNT30121467Cucumis sativusPhyscomitrium patens49.646.4681.82308forward
CNT30296842Cucumis sativusTriticum aestivum40.4236.0186.45251forward
CNT30224132Cucumis sativusHordeum vulgare45.7341.482.39284forward
CNT30387906Cucumis sativusTriticum turgidum40.4225.8886.45251forward
CNT30146334Cucumis sativusMedicago truncatula53.9533.786.57335forward
CNT30440878Cucumis sativusAegilops tauschii36.5528.8888.55227forward
CNT30647369Cucumis sativusRosa chinensis41.8728.788.08260forward
CNT30203418Cucumis sativusHelianthus annuus63.7796.8279.55396forward
CNT30685081Cucumis sativusTriticum urartu39.4525.5286.94245forward
CNT30721805Cucumis sativusTriticum spelta29.3112.687.36182forward
CNT30350899Cucumis sativusEragrostis tef54.9130.5685.34341forward
CNT30423483Cucumis sativusPapaver somniferum95.1757.683.25591forward
CNT30148140Cucumis sativusBrachypodium distachyon49.1180.2685.57305forward
CNT30101053Cucumis sativusOryza rufipogon39.9429.8486.29248forward
CNT30580076Cucumis sativusEchinochloa crusgalli40.4218.9787.25251forward
CNT30116111Cucumis sativusOryza nivara39.9428.3486.69248forward

Expression of CNT3050518

Peptides detected in this lncRNA

>peptide 1 (39 aa)
ECFYHHGLGGNHLNKSSISVLQKLGLFLQFFTRSPVNLS*

>peptide 2 (49 aa)
ENVSTTMGLVGIILTNPASPFFKNLGSFSSSLPDRLSILVKISANLTAM*

Sequence

>CNT3050518
GAGAATGTTTCTACCACCATGGGCTTGGTGGGAATCATCTTAACAAATCCAGCATCTCCGTTCTTCAAAAACTTGGGCTCTTTCTCCAGTTCTTTACCAG
ATCGCCTGTCAATCTTAGTTAAAATCTCGGCAAATTTGACAGCAATGTGAGATGTGTGGCAATCGAGTACAGGTGCATAACCATTTCCAATCTGTCCTGG
ATGGTTCATGATGATAACTTGGGACGTGAAATTGGCAGCTTCCTTGGCAGGATCATCCTTGGAATTTGAGGCAACATAACCACGCTTGAGATCCTTCACA
GCAACATTCTTCACGTTGAACCCCACGTTGTCACCAGGGAGAGCTTCTTGGAGAGCTTCGCTTTATAATGCCAGTTTCAACACGACCCACTGGAACAGTT
CCAATACCTCCAATCTTGTAGACATCCTGAAGTGGAAGACGAAGGGGTTTGTCAGATGGCCTCTTAGGCTCTTGGATCAGATCGAGAGCCTCAAGAAGGG
TCGGTCCCTTGTACCAGTCGAGGTTGGTGGATCTTTCAATCATGTTGTCACCCTCAAAGCCAGAGATGGGGACGAAGGGAATTTTTTCTGGGTTGTAGCC
AACCTTCTTGAGGTAGGAAGA