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Detailed information on CNT30603788


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692364Oryza punctataOryza sativa94.8299.297.051117forward
CNT30672814Oryza punctataSetaria viridis59.2565.4892.98698forward
CNT30639730Oryza punctataNymphaea colorata50.6864.9685.26597forward
CNT30546799Oryza punctataIpomoea triloba74.9671.9187.88883forward
CNT30518094Oryza punctataJuglans regia74.3693.5985.5876forward
CNT30371709Oryza punctataArabidopsis thaliana54.4199.5387.83641forward
CNT30618377Oryza punctataSesamum indicum32.77103.4983.94386forward
CNT30274113Oryza punctataChenopodium quinoa38.8873.485.37458forward
CNT3021028Oryza punctataCitrullus lanatus73.2669.4883.89863forward
CNT30525464Oryza punctataPhaseolus vulgaris49.49103.1983.19583forward
CNT30629525Oryza punctataVigna unguiculata32.7789.7786.53386forward
CNT30712097Oryza punctataGlycine max36.1635.7185.21426forward
CNT30224132Oryza punctataHordeum vulgare36.7663.1292.15433forward
CNT30564256Oryza punctataActinidia chinensis51.6152.2387.66608forward
CNT30173274Oryza punctataTrifolium pratense71.4862.685.87842forward
CNT30146334Oryza punctataMedicago truncatula52.8962.6885.07623forward
CNT30440472Oryza punctataAegilops tauschii28.155.6393.35331forward
CNT30665783Oryza punctataTriticum dicoccoides71.3992.3287.63841forward
CNT30310177Oryza punctataCamelina sativa74.3675.5286.76876forward
CNT3079066Oryza punctataBrassica juncea74.3673.3786.53876forward
CNT30608730Oryza punctataGossypium raimondii38.0374.6785.04448forward
CNT30127375Oryza punctataCorymbia citriodora44.493.7385.28523forward
CNT30721805Oryza punctataTriticum spelta20.1216.4192.41237forward
CNT30350898Oryza punctataEragrostis tef74.6278.992.72879forward
CNT30480841Oryza punctataArabidopsis halleri33.763.9388.66397forward
CNT30368495Oryza punctataSorghum bicolor62.2271.9391.41733forward
CNT30355521Oryza punctataLactuca sativa60.2774.4285.35710forward
CNT30369885Oryza punctataOryza glumipatula33.5391.2286.58395forward
CNT30427598Oryza punctataPapaver somniferum73.7763.5284.12869forward
CNT3024422Oryza punctataPopulus trichocarpa53.983.2283.94635forward
CNT3037774Oryza punctataCucumis melo39.960.885.53470forward
CNT30148140Oryza punctataBrachypodium distachyon31.7598.4293.05374forward
CNT30101006Oryza punctataOryza rufipogon44.9176.0193.57529forward
CNT30116376Oryza punctataOryza nivara43.5594.4895.71513forward
CNT30113122Oryza punctataFicus carica41.5158.9285.28489forward
CNT3050294Oryza punctataCucumis sativus39.3975.6984.7464forward

Expression of CNT30603788

Peptides detected in this lncRNA

>peptide 1 (56 aa)
FQLSIAAKAANCTSKNNDTGSSNVNTRIPKQPMDNNRTQNISFNRTEINESIKRLT*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATYPRFRSFTATFFTLNPTLSPGRASWRASWCISTDLTSVVRPLGPKVTTIPGLRTPVSTRPTGTVPIPPILYTS*

>peptide 3 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIILTIPASPFLRNLGSFSSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

Sequence

>CNT30603788
TTCCAGTTATCAATAGCAGCAAAAGCAGCGAATTGCACAAGCAAAAATAACGACACAGGAAGTAGCAATGTAAATACTCGCATTCCAAAACAGCCGATGG
ACAATAATCGGACTCAGAACATCAGTTTTAACCGAACAGAAATAAACGAGAGTATTAAACGACTGACATAGTGCACACTGCGAGCAGATATTAACGGTCC
ATGAAACGAATGCCATGGCCGTGGGCAAAACTTAACCAATACTAGAACAGCTAGATATCTCAAGTGCAGACATGGAAACCACCACTTGAACGAAGCTCAT
TTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCACCGGTTGGGTCCTTCTTCTCGACGTTCTTGATGACGCCAACAGCCACCGTTTGCCTCATGTCACGCA
CGGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACAACCATGGGCTTGGTGGGAATCATCTTAACCATACCAGCATCACCGTTCTTGAGGAA
CTTGGGCTCCTTCTCCAGCTCCTTACCAGATCGTCTGTCAATCTTGGTCACAAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACT
GGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGG
CCACATACCCACGCTTCAGATCCTTCACGGCAACGTTCTTCACGTTGAACCCGACGTTGTCACCAGGAAGAGCCTCCTGGAGAGCCTCGTGGTGCATCTC
AACCGACTTGACCTCAGTGGTCAGGCCGCTGGGACCAAAGGTCACCACCATACCAGGCTTGAGGACACCAGTCTCAACACGACCCACAGGCACGGTACCA
ATACCACCGATCTTGTACACATCCTGAAGAGGAAGACGCAGAGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAAGGTGG
GGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCGATCATGTTGTCACCCTCAAACCCAGAGATGGGAACGAAGGGAATCTTGTCAGGGTTGTACCCGAC
CTTCTTCAGGTAGGATGAGACTTCCTTCACGATTTCATCGTAACGGGCCTTGGAGTATTTGGGAGTGGTGGCATCCAT