Detailed information on CNT30521359


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 6e-95

BLAST vs NONCODE:
NONPOPT000587, E-value = 4e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672658Setaria italicaSetaria viridis94.2366.7798.23621forward
CNT30698521Setaria italicaQuercus lobata40.6747.7783.96268forward
CNT3014998Setaria italicaZea mays41.1248.9290.41271forward
CNT30608385Setaria italicaGossypium raimondii60.2472.1884.63397forward
CNT30477100Setaria italicaArabidopsis halleri26.2543.884.97173forward
CNT30368062Setaria italicaSorghum bicolor99.759.7892.09657forward
CNT30331991Setaria italicaDioscorea rotundata35.0548.8484.85231forward
CNT30551132Setaria italicaOryza brachyantha31.5653.8991.83208forward

Expression of CNT30521359

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPQNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

Sequence

>CNT30521359
GCAGACAATAATTCCTCCTCTAGGTAAATAACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCA
GATCAAGAATCACAACACAGAAGCCACAAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTG
AGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAG
GCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCAC
ACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCA
ACCTTGGTTGGGTCCTTGCCGGAGAAAGCGCCACCACCGTGGGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCAC
CATGAGGTCCACCGATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCG