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Detailed information on CNT30639623


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674434Nymphaea colorataSetaria viridis34.7479.7486.19181forward
CNT30698521Nymphaea colorataQuercus lobata34.1731.7385.96178forward
CNT30374620Nymphaea colorataArabidopsis thaliana48.1828.9882.87251forward
CNT30194995Nymphaea colorataPisum sativum36.6620.0684.29191forward
CNT30181754Nymphaea colorataSecale cereale38.5831.9686.57201forward
CNT30561874Nymphaea colorataActinidia chinensis40.3123.8183.81210forward
CNT30508545Nymphaea colorataSolanum lycopersicum22.4628.2685.47117forward
CNT30146819Nymphaea colorataMedicago truncatula34.1723.782.58178forward
CNT30437887Nymphaea colorataAegilops tauschii38.3928.5786.5200forward
CNT30608385Nymphaea colorataGossypium raimondii35.5133.6485.41185forward
CNT30477100Nymphaea colorataArabidopsis halleri24.5732.4185.94128forward
CNT30429132Nymphaea colorataPapaver somniferum47.7915.783.94249forward
CNT3022468Nymphaea colorataPopulus trichocarpa37.2422.6986.08194forward

Expression of CNT30639623

Peptides detected in this lncRNA

>peptide 1 (67 aa)
TIISMRQKHEKWEKRITGTPWTNTLCTLSAYSSKKGLTLGLFPLEWLNDLPCEICIIASKMAIGDLH*

>peptide 2 (44 aa)
MCTPSSIGVNNDLPTSKACITMRSPNDKSAGWVQVKYGFLIKIF*

>peptide 3 (30 aa)
MVFSSRYSDGTTGLITCSFKSAAILSFVTVS

Sequence

>CNT30639623
GCACAATTATTTCAATGAGGCAAAAACATGAAAAATGGGAAAAGAGAATAACAGGCACACCATGGACCAATACTTTGTGCACTCTGAGTGCATATAGCAG
TAAGAAAGGTTTAACTTTAGGCCTTTTCCCACTTGAGTGGCTTAACGATCTCCCATGTGAAATCTGCATCATCGCGTCCAAAATGGCCATAGGAGACCTG
CACTAGGCAACGGCGAGCGAGGCCTGATGCCACCACACTCTTTGCTGCCTGCCTAACAATGTAGGCGCCACTTCTGTCAACCTTGGTTGGGTCCTTTCCA
GAGAATGCACCACCTCCATGTGCACCCCATCCTCCATAGGTGTCAATAATGATCTTCCTACCAGTAAGGCCTGCATCACCATGAGGTCCCCCAATGACAA
ATCGGCCGGATGGGTTCAGGTGAAATATGGTTTTCTCATCAAGATATTCTGATGGAACAACAGGTTTGATCACATGTTCTTTCAAATCTGCTGCTATCTT
ATCGTTTGTGACTGTTTCGTC