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Detailed information on CNT30585638


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003894, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Echinochloa crusgalliOryza sativa50.7830.799.49786reverse complement
CNT30677056Echinochloa crusgalliSetaria viridis37.5348.9993.98581reverse complement
CNT30524664Echinochloa crusgalliSetaria italica32.9537.2599.22510reverse complement
CNT30639555Echinochloa crusgalliNymphaea colorata33.5930.4495.38520reverse complement
CNT30536068Echinochloa crusgalliEucalyptus grandis40.1818.0692.93622forward
CNT30513456Echinochloa crusgalliJuglans regia40.1819.693.89622reverse complement
CNT30500477Echinochloa crusgalliCoffea canephora40.1834.1693.57622reverse complement
CNT30616920Echinochloa crusgalliSesamum indicum25.4540.3390.1394forward
CNT30269781Echinochloa crusgalliChenopodium quinoa40.1821.0592.6622reverse complement
CNT30730500Echinochloa crusgalliCorchorus capsularis40.1852.495.18622reverse complement
CNT30630109Echinochloa crusgalliVigna unguiculata40.1819.7394.21622reverse complement
CNT30196411Echinochloa crusgalliPisum sativum38.1146.6493.22590reverse complement
CNT30638683Echinochloa crusgalliCapsicum annuum33.0199.0390.8511forward
CNT3090649Echinochloa crusgalliSolanum tuberosum40.1822.7594.05622reverse complement
CNT30186247Echinochloa crusgalliSecale cereale50.7855.2799.36786reverse complement
CNT30291213Echinochloa crusgalliTriticum aestivum50.7822.6399.24786reverse complement
CNT30225309Echinochloa crusgalliHordeum vulgare47.2260.6696.72731reverse complement
CNT30399645Echinochloa crusgalliTriticum turgidum50.7834.3799.36786forward
CNT30554621Echinochloa crusgalliOryza glaberrima13.4496.7499.52208reverse complement
CNT30444225Echinochloa crusgalliAegilops tauschii47.3566.3998.91733reverse complement
CNT30248027Echinochloa crusgalliAvena sativa34.2454.4197.55530forward
CNT30668159Echinochloa crusgalliTriticum dicoccoides44.1995.895.61684reverse complement
CNT30310298Echinochloa crusgalliCamelina sativa40.1840.7995.18622forward
CNT3062651Echinochloa crusgalliArabidopsis lyrata20.3537.8696.19315forward
CNT30460907Echinochloa crusgalliSaccharum spontaneum50.7823.59100786reverse complement
CNT30136065Echinochloa crusgalliLolium perenne41.67100.4797.98645reverse complement
CNT3018333Echinochloa crusgalliZea mays50.7827.53100786reverse complement
CNT3068134Echinochloa crusgalliLeersia perrieri17.5174.8694.1271forward
CNT30655263Echinochloa crusgalliRosa chinensis37.9232.5291.65587reverse complement
CNT30206724Echinochloa crusgalliHelianthus annuus37.0826.4595.64574reverse complement
CNT30126841Echinochloa crusgalliCorymbia citriodora17.1871.5194.36266reverse complement
CNT30713553Echinochloa crusgalliMalus domestica golden33.5977.1593.65520reverse complement
CNT30627950Echinochloa crusgalliDaucus carota24.6188.692.91381reverse complement
CNT30689043Echinochloa crusgalliTriticum urartu50.7839.0998.85786reverse complement
CNT30721122Echinochloa crusgalliTriticum spelta47.6789.7898.78738reverse complement
CNT30364730Echinochloa crusgalliSorghum bicolor25.7870.3799.25399forward
CNT30596725Echinochloa crusgalliOryza meridionalis50.8422.899.62787reverse complement
CNT30370808Echinochloa crusgalliOryza glumipatula13.4495.85100208reverse complement
CNT30154922Echinochloa crusgalliPrunus persica40.1836.8391.96622forward
CNT30411255Echinochloa crusgalliPapaver somniferum40.1820.4994.21622forward
CNT30705531Echinochloa crusgalliPrunus avium18.0910091.79280forward
CNT30646402Echinochloa crusgalliCannabis sativa32.7540.0890.73507forward
CNT30319706Echinochloa crusgalliAsparagus officinalis40.1821.6495.5622reverse complement
CNT30332807Echinochloa crusgalliDioscorea rotundata39.2136.7495.39607forward
CNT30148090Echinochloa crusgalliBrachypodium distachyon46.924.9999.45726forward
CNT30102929Echinochloa crusgalliOryza rufipogon40.5741.2697.77628forward
CNT30574740Echinochloa crusgalliOryza barthii18.5458.3398.95287reverse complement
CNT30604668Echinochloa crusgalliOryza punctata27.8498.1896.52431reverse complement

Expression of CNT30585638

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPRAEVRVPSAAALKYEPRGLAIASPRGSYQALRR*

>peptide 2 (32 aa)
MVIGLRTQGQYSCTTPCWYGGTEEARLAERWL*

>peptide 3 (32 aa)
MSKCIGRGAFRLRGKQTRKRGSTKRKRECRLE*

>peptide 4 (34 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKAERSPTDAF*

>peptide 5 (66 aa)
MGYILQRRSAWYEPRGEAMASPRGSYFSAAALGTRTSARGIFSTPSYPEKAGSPCVLKPITIFRLT*

>peptide 6 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSKRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 7 (43 aa)
MPYSQEKLERPSTKGYLYPKPTQVGRYSLPTHLCRFRVQVPFC*

>peptide 8 (61 aa)
MAWVTYFSAVAPGMSLVEKQWLVHGAHTSALQRLVLGPRLEAFSLPLLTLKKQGHLVSLNL*

Sequence

>CNT30585638
GGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGA
TGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAAACGCGAAAGCGGGGGTCG
ACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGA
GGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGG
CTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCC
GAAAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGC
TGCAGCGCTGAAGTATGAGCCCCGTGGACTAGCCATTGCTTCTCCACGAGGCTCATACCAGGCGCTACGGCGCTGAAGTATGTAACCCATGCCATACTCC
CAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGG
TACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACATACTTCAGCGCCGTAGCGCCTGGTATGAGCCTCGTGGAG
AAGCAATGGCTAGTCCACGGGGCTCATACTTCAGCGCTGCAGCGCTTGGTACTCGGACCTCGGCTCGAGGCATTTTCTCTACCCCTTCTTACCCTGAAAA
AGCAGGGTCACCTTGTGTCCTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAATATTGAC
CTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAAACCTTGGGTTTTCGGGGCATTGG
ATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGTTTGCTTCCCTCTAAGGCGGAACGCTCCCCT
ACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAA
AGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTG
TTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGAC