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Detailed information on CNT30730500


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Corchorus capsularisOryza sativa86.640.1695.621028forward
CNT30677083Corchorus capsularisSetaria viridis35.4758.893.11421forward
CNT30524664Corchorus capsularisSetaria italica77.1766.9195.41916forward
CNT30639555Corchorus capsularisNymphaea colorata88.5461.5396.961051forward
CNT30536068Corchorus capsularisEucalyptus grandis100.2534.5596.391190reverse complement
CNT30513456Corchorus capsularisJuglans regia100.4237.5697.41192forward
CNT30378667Corchorus capsularisArabidopsis thaliana24.2625.7498.96288forward
CNT30500477Corchorus capsularisCoffea canephora98.9964.5298.041175forward
CNT30616920Corchorus capsularisSesamum indicum44.1453.6390.08524reverse complement
CNT30269781Corchorus capsularisChenopodium quinoa10040.1796.381187forward
CNT30630109Corchorus capsularisVigna unguiculata101.0138.0496.331199forward
CNT30196858Corchorus capsularisPisum sativum94.9560.6993.791127forward
CNT30638683Corchorus capsularisCapsicum annuum43.3999.8193.4515reverse complement
CNT3090649Corchorus capsularisSolanum tuberosum99.3343.1298.221179forward
CNT30186247Corchorus capsularisSecale cereale97.2281.1594.541154forward
CNT30291213Corchorus capsularisTriticum aestivum97.2233.2294.631154forward
CNT30225309Corchorus capsularisHordeum vulgare76.4175.2791.51907forward
CNT30400299Corchorus capsularisTriticum turgidum86.648.295.531028forward
CNT3088853Corchorus capsularisVigna radiata22.4965.9398.5267reverse complement
CNT30554009Corchorus capsularisOryza glaberrima28.1461.2894.61334forward
CNT30441975Corchorus capsularisAegilops tauschii51.977.2995.78616forward
CNT30248027Corchorus capsularisAvena sativa78.8596.194.12936reverse complement
CNT30668159Corchorus capsularisTriticum dicoccoides42.1270.0391.8500forward
CNT30310298Corchorus capsularisCamelina sativa86.1867.0898.531023reverse complement
CNT3062651Corchorus capsularisArabidopsis lyrata57.6282.2198.39684reverse complement
CNT30460907Corchorus capsularisSaccharum spontaneum97.2234.6394.711154forward
CNT30142438Corchorus capsularisLolium perenne51.6498.0893.47613forward
CNT3018333Corchorus capsularisZea mays97.2240.4294.711154forward
CNT30655263Corchorus capsularisRosa chinensis10065.7694.361187forward
CNT30206724Corchorus capsularisHelianthus annuus92.3350.5198.911096forward
CNT30126841Corchorus capsularisCorymbia citriodora29.0692.7495.94345forward
CNT30713553Corchorus capsularisMalus domestica golden47.683.8397.52565forward
CNT30627950Corchorus capsularisDaucus carota35.7298.696.46424forward
CNT30688464Corchorus capsularisTriticum urartu101.1865.2794.51201forward
CNT30722943Corchorus capsularisTriticum spelta86.9451.2794.861032forward
CNT30364730Corchorus capsularisSorghum bicolor33.3669.8494.19396reverse complement
CNT30596725Corchorus capsularisOryza meridionalis97.333.4794.721155forward
CNT30357533Corchorus capsularisLactuca sativa35.6441.5598.35423forward
CNT30154922Corchorus capsularisPrunus persica10070.2894.361187reverse complement
CNT30412115Corchorus capsularisPapaver somniferum98.8234.8597.271173reverse complement
CNT30646402Corchorus capsularisCannabis sativa85.268093.771012reverse complement
CNT3056240Corchorus capsularisAmborella trichopoda21.0687.4198.4250forward
CNT30319706Corchorus capsularisAsparagus officinalis100.0841.3497.641188forward
CNT30332807Corchorus capsularisDioscorea rotundata95.3768.5297.441132reverse complement
CNT30148090Corchorus capsularisBrachypodium distachyon97.2239.7294.81154reverse complement
CNT30103033Corchorus capsularisOryza rufipogon97.5674.6693.011158reverse complement
CNT30576679Corchorus capsularisOryza barthii28.1463.6295.51334forward
CNT30585638Corchorus capsularisEchinochloa crusgalli52.440.1895.18622reverse complement
CNT30604668Corchorus capsularisOryza punctata33.8791.5792.04402forward

Expression of CNT30730500

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP*

>peptide 2 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVEVGQ*

>peptide 3 (68 aa)
MNGAKRSAEAVGCKNASVGERSALGGSARASGSRRSGSENVGLSNANIGENPMPRKPKGSSARFVHGG*

Sequence

>CNT30730500
AAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAGGGTGAAAAGAACCCCCGTCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCA
AGCAGTGGGAGGAGCCCAGGGCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTA
GCGAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG
GTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTG
AGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGA
CCTCAAAATAACAGGGGTCGAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAA
TGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGA
GCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGGGGGAAGCGC
CCGCGCGAGCGGGAGTAGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGGTTCCTCC
GCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGT
CCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCAAGGTGCCCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATG
CCCCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCTATACTCCCAGGAAAAGCTCGAACGACCTTCAACA