« Back to Camelina sativa search


Detailed information on CNT30310298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Camelina sativaOryza sativa67.0239.9295.31022reverse complement
CNT30677083Camelina sativaSetaria viridis27.6158.892.64421reverse complement
CNT30524664Camelina sativaSetaria italica59.6766.4795.16910reverse complement
CNT30639555Camelina sativaNymphaea colorata60.5254.0497.18923reverse complement
CNT30536068Camelina sativaEucalyptus grandis67.0829.796.191023forward
CNT30513456Camelina sativaJuglans regia67.0832.2397.851023reverse complement
CNT30378667Camelina sativaArabidopsis thaliana18.8925.7499.65288reverse complement
CNT30500477Camelina sativaCoffea canephora67.0256.1297.461022reverse complement
CNT30616920Camelina sativaSesamum indicum34.3653.6390.08524forward
CNT30269781Camelina sativaChenopodium quinoa67.0834.6296.481023reverse complement
CNT30730500Camelina sativaCorchorus capsularis67.0886.1898.531023reverse complement
CNT30630109Camelina sativaVigna unguiculata67.0832.4697.171023reverse complement
CNT30196411Camelina sativaPisum sativum65.5779.0594.21000reverse complement
CNT30503431Camelina sativaNicotiana attenuata38.9543.0198.65594forward
CNT3044711Camelina sativaPrunus dulcis18.0357.6598.91275forward
CNT30638683Camelina sativaCapsicum annuum33.5799.2292.97512forward
CNT3090649Camelina sativaSolanum tuberosum67.0837.4297.851023reverse complement
CNT30186247Camelina sativaSecale cereale67.0271.8795.211022reverse complement
CNT30291213Camelina sativaTriticum aestivum67.0229.4295.31022reverse complement
CNT30225309Camelina sativaHordeum vulgare59.4875.2791.29907reverse complement
CNT30400299Camelina sativaTriticum turgidum67.0247.9195.211022reverse complement
CNT30588765Camelina sativaMusa acuminata18.9541.498.62289forward
CNT3088853Camelina sativaVigna radiata17.5165.9397.75267forward
CNT30511396Camelina sativaSolanum lycopersicum20.3933.9996.46311reverse complement
CNT30554009Camelina sativaOryza glaberrima21.5160.1893.6328reverse complement
CNT30441975Camelina sativaAegilops tauschii40.3977.2995.94616reverse complement
CNT30248027Camelina sativaAvena sativa60.7995.1794.39927forward
CNT30668159Camelina sativaTriticum dicoccoides32.7970.0392.2500reverse complement
CNT3062651Camelina sativaArabidopsis lyrata44.8582.2199.85684forward
CNT30460907Camelina sativaSaccharum spontaneum67.0230.6795.41022reverse complement
CNT30136065Camelina sativaLolium perenne38.5691.5994.39588reverse complement
CNT3018333Camelina sativaZea mays67.0235.895.41022reverse complement
CNT30655263Camelina sativaRosa chinensis67.0856.6894.231023reverse complement
CNT30206724Camelina sativaHelianthus annuus63.5444.6598.25969reverse complement
CNT30126841Camelina sativaCorymbia citriodora22.6292.7495.07345reverse complement
CNT30713553Camelina sativaMalus domestica golden34.6278.3497.92528reverse complement
CNT30627950Camelina sativaDaucus carota25.389096.64387reverse complement
CNT30688464Camelina sativaTriticum urartu67.0255.5495.61022reverse complement
CNT30722943Camelina sativaTriticum spelta64.5948.9395.13985reverse complement
CNT30364730Camelina sativaSorghum bicolor26.0370.0294.96397forward
CNT30596725Camelina sativaOryza meridionalis67.0829.6495.411023reverse complement
CNT30357533Camelina sativaLactuca sativa22.3633.597.65341reverse complement
CNT30154922Camelina sativaPrunus persica66.9560.4594.121021forward
CNT30411255Camelina sativaPapaver somniferum66.8233.5697.061019forward
CNT30646402Camelina sativaCannabis sativa59.2171.3893.47903forward
CNT3056240Camelina sativaAmborella trichopoda16.3987.4197.6250reverse complement
CNT30319706Camelina sativaAsparagus officinalis67.0835.5997.651023reverse complement
CNT30332807Camelina sativaDioscorea rotundata65.760.6597.51002forward
CNT30148090Camelina sativaBrachypodium distachyon67.0235.1895.51022forward
CNT30102929Camelina sativaOryza rufipogon67.2867.4193.661026forward
CNT30576679Camelina sativaOryza barthii21.763.0594.56331reverse complement
CNT30585638Camelina sativaEchinochloa crusgalli40.7940.1895.18622forward
CNT30604668Camelina sativaOryza punctata26.3691.5792.54402reverse complement

Expression of CNT30310298

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFALLKPTFSLPLRPPPLARLLPPKAERSPTDAF*

>peptide 2 (37 aa)
MSRRLILQHARGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 3 (39 aa)
MDSAAVQKVNLFGNLRIYAYFQLPEAFRRLLRPSSSLGA*

>peptide 4 (43 aa)
MGYFSAVAPGTRTLARGIFSTPSYPEKTGTPCVLEPITIFRLT*

>peptide 5 (45 aa)
MLLGSEHKLVMLSATGLSPSRVRHSTASPSSTTLLLLSHNPVFTV*

>peptide 6 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADFSTSVGSDLHLVSPKLHPGHR*

>peptide 7 (55 aa)
MFQFARLSLACPWIQQQFKRLTYSGISGSTLIFNSPKHFVAYYALPRLWVPRYPP*

Sequence

>CNT30310298
ATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCGAACATTGGCTCGGGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAACAGGGACACCTTGCGTCC
TTGAACCGATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGC
CTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGT
TACTCAAGCCGACATTCTCGCTTCCGCTTCGTCCACCGCCGCTCGCGCGGTTGCTTCCCCCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCC
CACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCA
AACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCGACGATGAAG
CTTATCCCCCACCGTCTCACTGGCCGACCTTGACCCCAGTTATTTTGAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCC
CGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCA
CCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCA
GGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGG
CTCATTCTTCAACATGCACGCGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCAT
AAGCTAGTGATGCTTTCGGCTACTGGACTATCGCCATCTAGGGTGCGGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTTTATTGCTCTCCCACAACC
CCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCA
GGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTCAAAAGGTTAACCTATTCGGGAATCTCCGGATCTACGCTTATTTTCAACTCCCCGAAGCATTT
CGTCGCTTACTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTAACTTTAAGGCTATGCCATCC
TAAGGTGCTGCTAAATGGAAAGATC