CANTATAdb - search

Detailed information on CNT30677056

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001340, E-value = 1e-110

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521637	Setaria viridis	Setaria italica	25.21	58.86	93.65	299	forward
CNT30225309	Setaria viridis	Hordeum vulgare	46.54	45.81	91.85	552	forward
CNT30668159	Setaria viridis	Triticum dicoccoides	51.6	85.71	90.85	612	forward
CNT30136065	Setaria viridis	Lolium perenne	39.54	73.05	92.54	469	forward
CNT30713553	Setaria viridis	Malus domestica golden	33.56	59.05	87.94	398	forward
CNT30627950	Setaria viridis	Daucus carota	31.62	87.21	87.2	375	forward
CNT30721122	Setaria viridis	Triticum spelta	55.82	80.54	93.05	662	forward
CNT30585638	Setaria viridis	Echinochloa crusgalli	48.99	37.53	93.98	581	reverse complement
CNT30604668	Setaria viridis	Oryza punctata	35.75	96.58	91.04	424	forward

Expression of CNT30677056

Peptides detected in this lncRNA

>peptide 1 (29 aa)
KGSVEAVGCQNASIGERSTLEGSKHESGG*

>peptide 2 (35 aa)
MLRAEVRVPSAVALKYEPCGLAIASLRGSYQELRC*

>peptide 3 (32 aa)
MSKCINRGAFHLRGKQTRKRGLTKWKRECRLE*

>peptide 4 (55 aa)
MVRIQCPENPRFPPQGLSTEGESGPKIWPKGVVDGQQVNIPVLPLVAMEGWRRLG*

>peptide 5 (50 aa)
MSVKMRTTCTWTERPYEALLFTGIGFRPILRSLGGRQKKAPFPGWVASHQ*

Sequence

>CNT30677056
CTAAGGGATCTGTCGAAGCTGTGGGATGTCAAAATGCATCAATAGGGGAGCGTTCCACCTTAGAGGGAAGCAAACACGAAAGCGGGGGTTGACGAAATGG
AAGAGAGAATGTCGGCTTGAGTAACGAAAACAATGGTGAGAATCCAATGCCCTGAAAATCCAAGGTTTCCTCCACAAGGTTTGTCCACAGAGGGTGAGTC
AGGGCCTAAGATCTGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGCTATGGAGGGATGGAGGAGGCTAGGTTAG
CCGAAACATGGTTATAGGTTTAAGGACACAACGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTTGAGAAAATGCTTCGAGCCGAGGTCCGAGTACCAAGT
GCTGTAGCGCTGAAGTATGAGCCCTGTGGACTAGCCATTGCTTCTCTACGAGGCTCATACCAGGAGCTACGGTGCTGAAGTATGTAGCCCATGCCATACT
CCCAGGAAAAACTCAAACGACCTTCAACAAAAGGGTACCTATACCCGAAACTGACACAGGTGGGTAGGTAGAGAATACCTAGGGGTGCGAGACAACTCTC
TCTAAGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGTGCCCACTCGCAAAAGGAGGTCGCTGTGACCAGGCCCGGGCGACTGTTTACCAAA
AACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGAGCTGATGCCTGCCCAATGCTGGAAGGTCAAGGAAGTTGGTAAGTTCCGACCTGCACGAAAG
GCATAATGATCTAGGCACTGTCTCGGAGAGAGGCTCAGTGAAATAGACATGTCTGTGAAGATGAGGACTACCTGCACCTGGACAGAAAGACCCTATGAAG
CTTTACTGTTCACTGGGATTGGCTTTAGGCCTATCCTGCGCAGCTTAGGTGGAAGACAAAAGAAGGCCCCCTTCCCAGGGTGGGTGGCGAGCCATCAGTG
AGATATCACTCTGAAAGAGCTTGGATTCTAACCTTGTGTCAGACCCGTGAGCCAAGGGACAGTCTTAGGTAGACAGTTTCTACAAGGCGTAGGCCTCCCA
AAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAAGGTAGAAGGGAGCGAACAATTGA