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Detailed information on CNT30524664


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Setaria italicaOryza sativa101.154.0698.481384forward
CNT30677083Setaria italicaSetaria viridis30.7558.893.59421forward
CNT30639555Setaria italicaNymphaea colorata67.3553.9894.14922forward
CNT30536068Setaria italicaEucalyptus grandis66.9126.693.34916reverse complement
CNT30513456Setaria italicaJuglans regia66.9128.8694.54916forward
CNT30378667Setaria italicaArabidopsis thaliana20.3124.8495.68278forward
CNT30500477Setaria italicaCoffea canephora66.9150.394.65916forward
CNT30616920Setaria italicaSesamum indicum37.9853.2287.5520reverse complement
CNT30269781Setaria italicaChenopodium quinoa66.7630.9393.33914forward
CNT30730500Setaria italicaCorchorus capsularis66.9177.1795.41916forward
CNT30630109Setaria italicaVigna unguiculata66.9129.0694.65916forward
CNT30196411Setaria italicaPisum sativum67.0672.5791.94918forward
CNT30503431Setaria italicaNicotiana attenuata44.1943.8195.7605reverse complement
CNT3044711Setaria italicaPrunus dulcis20.8959.9696.15286reverse complement
CNT30638683Setaria italicaCapsicum annuum35.9495.3590.04492reverse complement
CNT3090649Setaria italicaSolanum tuberosum66.9133.594.98916forward
CNT30193689Setaria italicaSecale cereale89.1998.7998.361221forward
CNT30291213Setaria italicaTriticum aestivum67.7126.6898.49927forward
CNT30225309Setaria italicaHordeum vulgare5865.8994.21794forward
CNT30400299Setaria italicaTriticum turgidum95.4761.2898.391307forward
CNT30588765Setaria italicaMusa acuminata22.2843.796.39305reverse complement
CNT30511396Setaria italicaSolanum lycopersicum28.9343.2891.92396forward
CNT30554009Setaria italicaOryza glaberrima25.8664.9596.33354forward
CNT30441975Setaria italicaAegilops tauschii44.8577.0498.05614forward
CNT30248027Setaria italicaAvena sativa67.4994.8796.43924reverse complement
CNT30664460Setaria italicaTriticum dicoccoides26.3799.7298.34361forward
CNT30310298Setaria italicaCamelina sativa66.4759.6795.16910reverse complement
CNT3062651Setaria italicaArabidopsis lyrata50.3382.8194.92689reverse complement
CNT30460907Setaria italicaSaccharum spontaneum67.7127.8298.92927forward
CNT30136065Setaria italicaLolium perenne35.1474.9298.13481forward
CNT3018333Setaria italicaZea mays67.7132.4798.92927forward
CNT3068134Setaria italicaLeersia perrieri24.2591.7193.67332reverse complement
CNT30655263Setaria italicaRosa chinensis66.9150.7591.59916forward
CNT30206293Setaria italicaHelianthus annuus66.9141.6995.31916forward
CNT30126841Setaria italicaCorymbia citriodora23.9688.1793.29328forward
CNT30713553Setaria italicaMalus domestica golden29.7360.3994.84407forward
CNT30689044Setaria italicaTriticum urartu101.151.3498.271384forward
CNT30720907Setaria italicaTriticum spelta64.7286.7898.31886reverse complement
CNT30363927Setaria italicaSorghum bicolor26.1588.8399.16358forward
CNT30596725Setaria italicaOryza meridionalis67.7126.8698.71927forward
CNT30357533Setaria italicaLactuca sativa24.6233.195.25337forward
CNT30154922Setaria italicaPrunus persica66.9154.2391.38916reverse complement
CNT30412183Setaria italicaPapaver somniferum66.9132.5394.98916forward
CNT30646402Setaria italicaCannabis sativa66.6972.1790.58913reverse complement
CNT30319706Setaria italicaAsparagus officinalis67.2832.0595.66921forward
CNT30332807Setaria italicaDioscorea rotundata67.0655.5795.53918reverse complement
CNT30148090Setaria italicaBrachypodium distachyon67.7131.9198.49927reverse complement
CNT30102929Setaria italicaOryza rufipogon68.0161.1796.56931reverse complement
CNT30576679Setaria italicaOryza barthii25.8667.4397.18354forward
CNT30585638Setaria italicaEchinochloa crusgalli37.2532.9599.22510reverse complement
CNT30604668Setaria italicaOryza punctata22.2869.4898.69305forward

Expression of CNT30524664

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MSNASVGERSALEGSKRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 2 (48 aa)
MSRRLIGSGLVKGMEPTGAVAKASLHRAMSLLMDPNLGDLSMTRMKLG*

>peptide 3 (42 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCAVPNRGKL*

>peptide 4 (31 aa)
WIPRHPETRKGVAATKCFGELKISIDPEIPK*

Sequence

>CNT30524664
GTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTC
AACCTTTTGAACTGCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCC
GTAGTAGCGGCGAGCGAAATGGGAGCAGCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCGC
ACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGAC
CACCTTGCAAGGCTAAATACTCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGAC
TCATAGGCAGTGGCTTGGTTAAGGGAATGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATGTCACTGCTTATGGACCCGAACCTGGG
TGATCTATCCATGACCAGGATGAAGCTTGGATGAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA
TGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTG
CGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAGCTTCATCGTC
GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAG
CAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAA
TGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAAACGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATT
GGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCTAAGATCAGGCCGAAAGGCGTAGTCGATG
GACAACAGGTCAATATTCCTGTACTACCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAA