« Back to Avena sativa search


Detailed information on CNT30248027


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Avena sativaOryza sativa97.2336.9997.36947reverse complement
CNT30676938Avena sativaSetaria viridis45.0745.6892.48439reverse complement
CNT30524664Avena sativaSetaria italica94.8767.4996.43924reverse complement
CNT30639555Avena sativaNymphaea colorata98.8756.3893.15963reverse complement
CNT30536068Avena sativaEucalyptus grandis96.127.1892.31936forward
CNT30513456Avena sativaJuglans regia96.129.4993.38936reverse complement
CNT30378667Avena sativaArabidopsis thaliana28.8525.1195.37281reverse complement
CNT30500477Avena sativaCoffea canephora95.5951.1393.34931reverse complement
CNT30616920Avena sativaSesamum indicum53.1853.0286.29518forward
CNT30269781Avena sativaChenopodium quinoa94.3531.192.49919reverse complement
CNT30730500Avena sativaCorchorus capsularis96.178.8594.12936reverse complement
CNT30630109Avena sativaVigna unguiculata96.129.793.38936reverse complement
CNT30196411Avena sativaPisum sativum95.7973.7591.21933reverse complement
CNT30503431Avena sativaNicotiana attenuata65.245.9893.54635forward
CNT3044711Avena sativaPrunus dulcis29.3659.9694.41286forward
CNT30638683Avena sativaCapsicum annuum52.6799.4289.47513forward
CNT3090649Avena sativaSolanum tuberosum98.6735.1593.34961reverse complement
CNT30186247Avena sativaSecale cereale99.7968.3597.33972reverse complement
CNT30291213Avena sativaTriticum aestivum99.7927.9897.43972reverse complement
CNT30225309Avena sativaHordeum vulgare83.6867.6393.25815reverse complement
CNT30400299Avena sativaTriticum turgidum97.2344.497.25947reverse complement
CNT30588765Avena sativaMusa acuminata34.0947.5694.58332forward
CNT3088853Avena sativaVigna radiata27.4165.9394.38267forward
CNT30511396Avena sativaSolanum lycopersicum31.5233.5592.83307reverse complement
CNT30554009Avena sativaOryza glaberrima37.4766.9795.07365reverse complement
CNT30441975Avena sativaAegilops tauschii63.2477.2997.24616reverse complement
CNT30668159Avena sativaTriticum dicoccoides43.8459.894.85427reverse complement
CNT30310298Avena sativaCamelina sativa95.1760.7994.39927forward
CNT3062651Avena sativaArabidopsis lyrata70.7482.8194.05689forward
CNT30460907Avena sativaSaccharum spontaneum99.7929.1797.43972reverse complement
CNT30136065Avena sativaLolium perenne51.4478.0496.81501reverse complement
CNT3018333Avena sativaZea mays99.7934.0597.43972reverse complement
CNT3068134Avena sativaLeersia perrieri33.9891.4492.75331forward
CNT30655263Avena sativaRosa chinensis99.1853.5290.48966reverse complement
CNT30206293Avena sativaHelianthus annuus96.142.694.02936reverse complement
CNT30126841Avena sativaCorymbia citriodora33.4787.6392.02326reverse complement
CNT30713553Avena sativaMalus domestica golden43.8463.3593.68427reverse complement
CNT30623039Avena sativaDaucus carota26.910093.51262forward
CNT30688464Avena sativaTriticum urartu99.7952.8397.53972reverse complement
CNT30720907Avena sativaTriticum spelta93.9489.6297.16915forward
CNT30364730Avena sativaSorghum bicolor39.3267.5597.13383forward
CNT30596725Avena sativaOryza meridionalis99.7928.1797.63972reverse complement
CNT30357533Avena sativaLactuca sativa34.633.193.77337reverse complement
CNT30154922Avena sativaPrunus persica95.1754.8890.72927forward
CNT30412183Avena sativaPapaver somniferum96.133.2493.8936reverse complement
CNT30646402Avena sativaCannabis sativa93.8472.2589.39914forward
CNT30319706Avena sativaAsparagus officinalis99.3833.6894.32968reverse complement
CNT30332807Avena sativaDioscorea rotundata99.3858.694.11968forward
CNT30148090Avena sativaBrachypodium distachyon99.7933.4697.63972forward
CNT30102929Avena sativaOryza rufipogon100.2164.1395.9976forward
CNT30576679Avena sativaOryza barthii37.8970.2995.93369reverse complement
CNT30585638Avena sativaEchinochloa crusgalli54.4134.2497.55530forward
CNT30604668Avena sativaOryza punctata33.8875.1796.97330reverse complement

Expression of CNT30248027

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MDRSPRFGSISIDNRPMKTRFRYGSGGFRSLNQATAYESPAHSSTCTWLEITFPSHCLGAQH

>peptide 2 (54 aa)
MSSQLLRLNAFRGELASSGFEWHFTPNHNSSADSSTSVGSDLCLVSSQLHPGHG*

>peptide 3 (34 aa)
MFSLLKPTFSLPLRRPPLSTLLPSKAERSPTDAF*

Sequence

>CNT30248027
GCCCTTAAACCTATAACCATCTTTTGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAATATTGACATGTTGTCCATCGACT
ACGCCTTCCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTT
TCGTTACTCAAGCCGACATTCTCACTTCCGCTTCGTCGACCCCCGCTTTCGACGTTGCTTCCCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGAC
ATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTTGATCAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTA
GGCAAACCTCCTGGTTGTCTTTGCACCCCCACCTCCTTTATCACTAAGCGGTCATTTAGGGGTCTTAGCTGGTGATCCGGGCTATTTCCCTCTCGACGAT
GAAGCTTATCCCCTATCGTCTCACTGGCCGACCTTGACCCCCGTTATTTTGGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCACTCGTGC
AGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACTAGCTAGCTCTGGGTTCGAGTGGCAT
TTCACCCCTAACCATAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTTTCATCCCAGCTTCATCCTGGTCATGGATAGATCA
CCCAGGTTCGGGTCCATAAGCATTGACAATCGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTCCCTTAACCAAGCCACTGCCTATG
AGTCGCCGGCTCATTCTTCAACATGCACGTGGTTAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAGCAC