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Detailed information on CNT30136065


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 1e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Lolium perenneOryza sativa100.4725.297.83645forward
CNT30677056Lolium perenneSetaria viridis73.0539.5492.54469forward
CNT30524664Lolium perenneSetaria italica74.9235.1498.13481forward
CNT30639555Lolium perenneNymphaea colorata76.4828.7594.7491forward
CNT30536068Lolium perenneEucalyptus grandis90.1916.8192.57579reverse complement
CNT30616920Lolium perenneSesamum indicum60.1239.5190.16386reverse complement
CNT30196411Lolium perennePisum sativum87.3844.3592.16561forward
CNT30190954Lolium perenneSecale cereale100.4773.1398.45645reverse complement
CNT30291213Lolium perenneTriticum aestivum100.4718.5798.14645forward
CNT30225309Lolium perenneHordeum vulgare98.4452.4595.57632forward
CNT30401184Lolium perenneTriticum turgidum100.4749.9297.98645reverse complement
CNT30444225Lolium perenneAegilops tauschii96.7356.2598.23621forward
CNT30248027Lolium perenneAvena sativa78.0451.4496.81501reverse complement
CNT30668159Lolium perenneTriticum dicoccoides89.180.1194.93572forward
CNT30310298Lolium perenneCamelina sativa91.5938.5694.39588reverse complement
CNT30460907Lolium perenneSaccharum spontaneum100.4719.3697.98645forward
CNT3018333Lolium perenneZea mays100.4722.5997.98645forward
CNT30655263Lolium perenneRosa chinensis86.9230.9191.04558forward
CNT30206724Lolium perenneHelianthus annuus84.8925.1294.68545forward
CNT30713553Lolium perenneMalus domestica golden78.6674.9393.86505forward
CNT30627950Lolium perenneDaucus carota58.5787.4492.55376forward
CNT30689044Lolium perenneTriticum urartu100.4723.9298.14645forward
CNT30721122Lolium perenneTriticum spelta97.5176.1697.76626forward
CNT30364730Lolium perenneSorghum bicolor62.1570.3798.5399reverse complement
CNT30596725Lolium perenneOryza meridionalis100.6218.7297.99646forward
CNT30705531Lolium perennePrunus avium43.6110091.79280reverse complement
CNT30332807Lolium perenneDioscorea rotundata90.0334.9994.64578reverse complement
CNT30148090Lolium perenneBrachypodium distachyon100.4722.298.29645reverse complement
CNT30574740Lolium perenneOryza barthii44.758.3398.61287forward
CNT30585638Lolium perenneEchinochloa crusgalli100.4741.6797.98645reverse complement
CNT30604668Lolium perenneOryza punctata64.9594.9996.16417forward

Expression of CNT30136065

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGG*

>peptide 2 (32 aa)
MSKCIGRGAFRLRGKQPRKRGLTKRKRECRLE*

>peptide 3 (31 aa)
MPRAEVRVPSAAALYEPHGLAIASPRGSYQEL

>peptide 4 (43 aa)
HRLEGNSPDHQLRPLNDCSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30136065
TTCATCGTCTTGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACTGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTT
GCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGG
GATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTTGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAA
CGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGG
CGTAGTCGATGGACAACAGATCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAG
GACACAAGGTGACCCTGCTTTGTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGCTGTATGAGCCCCAT
GGACTAGCGATTGCTTCTCCACGAGGCTCATACCAGGAGCTA