« Back to Corymbia citriodora search


Detailed information on CNT30126841


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 6e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Corymbia citriodoraSetaria viridis69.0981.3391.44257reverse complement
CNT30524664Corymbia citriodoraSetaria italica88.1723.9693.29328forward
CNT30639555Corymbia citriodoraNymphaea colorata94.0920.4993.14350forward
CNT30536068Corymbia citriodoraEucalyptus grandis92.7410.0294.2345reverse complement
CNT30378667Corymbia citriodoraArabidopsis thaliana33.0610.9995.12123forward
CNT30500477Corymbia citriodoraCoffea canephora92.7418.9596.52345forward
CNT30616920Corymbia citriodoraSesamum indicum88.7133.7887.88330reverse complement
CNT30269781Corymbia citriodoraChenopodium quinoa91.6711.5495.01341forward
CNT30730500Corymbia citriodoraCorchorus capsularis92.7429.0695.94345forward
CNT30202038Corymbia citriodoraPisum sativum91.6729.9691.2341reverse complement
CNT30503431Corymbia citriodoraNicotiana attenuata74.7320.1395.32278reverse complement
CNT30708588Corymbia citriodoraGlycine max43.0171.1194.38160reverse complement
CNT30638683Corymbia citriodoraCapsicum annuum65.8647.4892.65245reverse complement
CNT3090649Corymbia citriodoraSolanum tuberosum92.7412.6295.94345forward
CNT30193689Corymbia citriodoraSecale cereale92.7427.9193.33345forward
CNT30227123Corymbia citriodoraHordeum vulgare76.0874.8794.35283forward
CNT30399645Corymbia citriodoraTriticum turgidum92.7415.0993.33345reverse complement
CNT3088853Corymbia citriodoraVigna radiata65.8660.4994.29245reverse complement
CNT30510842Corymbia citriodoraSolanum lycopersicum68.5546.8892.55255forward
CNT30554621Corymbia citriodoraOryza glaberrima54.8494.8893.14204forward
CNT30441975Corymbia citriodoraAegilops tauschii92.7443.2992.75345forward
CNT30248027Corymbia citriodoraAvena sativa87.6333.4792.02326reverse complement
CNT30664460Corymbia citriodoraTriticum dicoccoides83.685.9192.93311forward
CNT30310298Corymbia citriodoraCamelina sativa92.7422.6295.07345reverse complement
CNT3062651Corymbia citriodoraArabidopsis lyrata92.7441.4795.36345reverse complement
CNT3082954Corymbia citriodoraBrassica juncea32.810.3490.16122forward
CNT30136319Corymbia citriodoraLolium perenne92.7460.6393.04345reverse complement
CNT30609809Corymbia citriodoraGossypium raimondii28.7625.1888.79107forward
CNT3068134Corymbia citriodoraLeersia perrieri87.6390.0689.26326reverse complement
CNT30655263Corymbia citriodoraRosa chinensis91.9418.9591.23342forward
CNT30206293Corymbia citriodoraHelianthus annuus92.7415.796.52345forward
CNT30713553Corymbia citriodoraMalus domestica golden44.0924.3396.95164forward
CNT30623039Corymbia citriodoraDaucus carota15.5922.1410058reverse complement
CNT30720907Corymbia citriodoraTriticum spelta92.7433.7993.33345reverse complement
CNT30363927Corymbia citriodoraSorghum bicolor60.4855.8393.78225forward
CNT30370808Corymbia citriodoraOryza glumipatula54.8494.0193.63204forward
CNT30154922Corymbia citriodoraPrunus persica92.4720.3792.73344reverse complement
CNT30412183Corymbia citriodoraPapaver somniferum92.7412.2595.36345forward
CNT30646295Corymbia citriodoraCannabis sativa91.6739.792.67341forward
CNT30332807Corymbia citriodoraDioscorea rotundata92.7420.8895.36345reverse complement
CNT30102929Corymbia citriodoraOryza rufipogon92.7422.6792.46345reverse complement
CNT30574740Corymbia citriodoraOryza barthii58.0643.993.06216forward
CNT30585638Corymbia citriodoraEchinochloa crusgalli71.5117.1894.36266reverse complement
CNT30603500Corymbia citriodoraOryza punctata41.1359.5392.16153forward

Expression of CNT30126841

Peptides detected in this lncRNA

>peptide 1 (35 aa)
KEMKENGAGREGGTKSRQTLNTRYDLQIIGVKVGQ*

>peptide 2 (48 aa)
MGDKLHHREGNGPDHQIRPLNDRSVIKEVGVQRQPGGLPRNSHLRKSA*

Sequence

>CNT30126841
AAGGAAATGAAAGAGAACGGTGCGGGCCGCGAGGGCGGTACCAAATCGAGGCAAACTCTAAATACTAGATATGACCTCCAAATAATAGGGGTCAAGGTCG
GCCAGTGAGACGATGGGGGATAAGCTTCATCATCGAGAGGGAAACGGCCCGGATCACCAAATAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAG
GGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAACAGCCACCTTCGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAATGGG
GCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATACATCGGTAGGGGAGCGTTCCGCCTTGGCAAACAAT