Detailed information on CNT30554621


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 2e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Oryza glaberrimaSetaria viridis66.0544.9497.18142reverse complement
CNT30616920Oryza glaberrimaSesamum indicum82.7918.2290.45178reverse complement
CNT30638683Oryza glaberrimaCapsicum annuum93.9539.1590.1202reverse complement
CNT30227123Oryza glaberrimaHordeum vulgare96.7455.0399.52208forward
CNT3088853Oryza glaberrimaVigna radiata60.4732.196.92130reverse complement
CNT30510842Oryza glaberrimaSolanum lycopersicum66.0526.195.77142forward
CNT30441550Oryza glaberrimaAegilops tauschii96.7430.3699.04208forward
CNT30664460Oryza glaberrimaTriticum dicoccoides91.1654.1498.98196forward
CNT3082954Oryza glaberrimaBrassica juncea54.429.9289.74117forward
CNT30136319Oryza glaberrimaLolium perenne96.7436.5699.52208reverse complement
CNT30609809Oryza glaberrimaGossypium raimondii38.1419.2989.0282forward
CNT3068134Oryza glaberrimaLeersia perrieri96.7457.4693.27208reverse complement
CNT30126841Oryza glaberrimaCorymbia citriodora94.8854.8493.14204forward
CNT30713553Oryza glaberrimaMalus domestica golden65.5820.9295.74141forward
CNT30363927Oryza glaberrimaSorghum bicolor94.4250.3799.51203forward
CNT30370808Oryza glaberrimaOryza glumipatula98.697.799.53212forward
CNT30149910Oryza glaberrimaBrachypodium distachyon96.7464.899.52208reverse complement
CNT30577320Oryza glaberrimaOryza barthii10049.54100215reverse complement
CNT30585638Oryza glaberrimaEchinochloa crusgalli96.7413.4499.52208reverse complement
CNT30603500Oryza glaberrimaOryza punctata60.9350.9796.95131forward
CNT30336936Oryza glaberrimaCynara cardunculus30.236.6196.9265reverse complement

Expression of CNT30554621

Peptides detected in this lncRNA

>peptide 1 (43 aa)
CSREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30554621
CTTGCTCTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTT
GCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCGGCCGAAGCTGTGG
GATGTCAAAATGCAT