CANTATAdb - search

Detailed information on CNT30186247

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696475	Secale cereale	Oryza sativa	89.66	49.8	99.29	1275	forward
CNT30730500	Secale cereale	Corchorus capsularis	81.15	97.22	94.54	1154	forward
CNT30291213	Secale cereale	Triticum aestivum	98.73	40.41	99.64	1404	forward
CNT30225309	Secale cereale	Hordeum vulgare	74.4	87.8	95.27	1058	forward
CNT30400299	Secale cereale	Triticum turgidum	89.66	59.77	99.69	1275	forward
CNT30248027	Secale cereale	Avena sativa	68.35	99.79	97.33	972	reverse complement
CNT30668159	Secale cereale	Triticum dicoccoides	50.21	100	96.22	714	forward
CNT30310298	Secale cereale	Camelina sativa	71.87	67.02	95.21	1022	reverse complement
CNT3018333	Secale cereale	Zea mays	98.73	49.18	99.43	1404	forward
CNT30689042	Secale cereale	Triticum urartu	98.73	48.72	99.5	1404	forward
CNT30720907	Secale cereale	Triticum spelta	71.66	99.8	99.51	1019	reverse complement
CNT30596725	Secale cereale	Oryza meridionalis	98.8	40.71	99.43	1405	forward
CNT30646402	Secale cereale	Cannabis sativa	71.87	80.79	89.92	1022	reverse complement
CNT30148090	Secale cereale	Brachypodium distachyon	89.45	43.79	99.45	1272	reverse complement
CNT30585638	Secale cereale	Echinochloa crusgalli	55.27	50.78	99.36	786	reverse complement

Expression of CNT30186247

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 2 (35 aa)
MPRAEVRVPSAAALKYEPRGLAIASPRGSYQALRR*

>peptide 3 (38 aa)
MSRRLIGSGLVKGTEPTGAVAKASLNRAIVTAYGPEPG*

>peptide 4 (48 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

>peptide 5 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCARGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 6 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

Sequence

>CNT30186247
CGAACGTCNNNNNNNNNNCCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGGG
TAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATA
GGCAGTGGCTTGGTTAAGGGAACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGAT
CTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC
CACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCGC
GCGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCG
TCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGA
AGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCA
AAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAAC
ATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTC
GATGGACAACAGGTCAATATTACTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAA
GGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGCTGAAGTATGAGCCCCGTGGAC
TAGCGATTGCTTCTCCACGAGGCTCATACCAGGCGCTACGGCGCTGAAGTATGTAACTGATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAA
AGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAAC
TTCGGGAGAAGGGGTGCCCCCT