« Back to Oryza punctata search


Detailed information on CNT30604668


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT000851, E-value = 4e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Oryza punctataOryza sativa98.1816.8496.29431forward
CNT30677056Oryza punctataSetaria viridis96.5835.7591.04424forward
CNT30524664Oryza punctataSetaria italica69.4822.2898.69305forward
CNT30639555Oryza punctataNymphaea colorata72.8918.7494.06320forward
CNT30536068Oryza punctataEucalyptus grandis85.1910.8691.71374reverse complement
CNT30500477Oryza punctataCoffea canephora91.5722.0889.8402forward
CNT30617447Oryza punctataSesamum indicum59.4544.0990.42261reverse complement
CNT30730500Oryza punctataCorchorus capsularis91.5733.8792.04402forward
CNT30632450Oryza punctataVigna unguiculata95.4418.8490.21419forward
CNT30196411Oryza punctataPisum sativum88.1530.5989.92387forward
CNT30638683Oryza punctataCapsicum annuum72.6761.8290.28319reverse complement
CNT30190954Oryza punctataSecale cereale98.1848.8796.52431reverse complement
CNT30291213Oryza punctataTriticum aestivum98.1812.4196.75431forward
CNT30225309Oryza punctataHordeum vulgare97.9535.6893.49430forward
CNT30399645Oryza punctataTriticum turgidum97.9518.896.74430forward
CNT30444225Oryza punctataAegilops tauschii98.1839.0496.29431forward
CNT30248027Oryza punctataAvena sativa75.1733.8896.97330reverse complement
CNT30668159Oryza punctataTriticum dicoccoides98.1860.3693.74431forward
CNT30310298Oryza punctataCamelina sativa91.5726.3692.54402reverse complement
CNT3082954Oryza punctataBrassica juncea41.4615.4291.21182forward
CNT30136065Oryza punctataLolium perenne94.9964.9596.16417forward
CNT30609809Oryza punctataGossypium raimondii53.5355.2988.51235forward
CNT30655263Oryza punctataRosa chinensis85.8820.8988.86377forward
CNT30206222Oryza punctataHelianthus annuus91.5762.4291.54402forward
CNT30713553Oryza punctataMalus domestica golden91.859.7991.32403forward
CNT30627950Oryza punctataDaucus carota82.2383.9590.58361forward
CNT30684661Oryza punctataTriticum urartu98.1810.1896.75431forward
CNT30719996Oryza punctataTriticum spelta97.4967.396.26428reverse complement
CNT30364730Oryza punctataSorghum bicolor78.8261.0297.69346reverse complement
CNT30596725Oryza punctataOryza meridionalis98.4112.5296.53432forward
CNT30154922Oryza punctataPrunus persica91.5723.889.05402reverse complement
CNT30411255Oryza punctataPapaver somniferum78.1311.393.88343reverse complement
CNT30705531Oryza punctataPrunus avium63.7810091.43280reverse complement
CNT30332807Oryza punctataDioscorea rotundata91.5724.3392.29402reverse complement
CNT30102929Oryza punctataOryza rufipogon97.4928.1294.16428reverse complement
CNT30585638Oryza punctataEchinochloa crusgalli98.1827.8496.52431reverse complement

Expression of CNT30604668

Peptides detected in this lncRNA

>peptide 1 (69 aa)
HLTGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 2 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

Sequence

>CNT30604668
TCATCTCACCGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGG
GGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCC
ACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCTTGTAGGTACGGAGGGACGGAG
GAGGCTAGGTTAGCTTAAAGATGGTTATAGGTATAAGGACACAAGGTGACCCTGCTTTTTAAGGGCAACAAGGGGTCGAGAAAATACCTCGAACCGAGGT
CCGAGTACCAAGTGTTGCAGCGCTGAACTATGAGCCCCG