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Detailed information on CNT30713553


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT000851, E-value = 2e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Malus domestica goldenOryza sativa77.1520.3193.46520forward
CNT30677056Malus domestica goldenSetaria viridis59.0533.5687.94398forward
CNT30524664Malus domestica goldenSetaria italica60.3929.7394.84407forward
CNT30639555Malus domestica goldenNymphaea colorata62.6124.7197.87422forward
CNT30536068Malus domestica goldenEucalyptus grandis89.7617.5796.03605reverse complement
CNT30513456Malus domestica goldenJuglans regia89.7619.0697.52605forward
CNT30500477Malus domestica goldenCoffea canephora89.7633.2295.54605forward
CNT30617317Malus domestica goldenSesamum indicum47.4896.196.25320forward
CNT30269781Malus domestica goldenChenopodium quinoa89.7620.4795.37605forward
CNT30730500Malus domestica goldenCorchorus capsularis83.8347.697.52565forward
CNT30630109Malus domestica goldenVigna unguiculata89.7619.1996.03605forward
CNT30196411Malus domestica goldenPisum sativum91.6948.8591.42618forward
CNT30712450Malus domestica goldenGlycine max40.2195.4292.25271forward
CNT30638683Malus domestica goldenCapsicum annuum63.582.9593.46428reverse complement
CNT3090649Malus domestica goldenSolanum tuberosum89.7622.1396.53605forward
CNT30178555Malus domestica goldenSecale cereale82.7966.2793.55558forward
CNT30291213Malus domestica goldenTriticum aestivum77.1514.9793.65520forward
CNT30225309Malus domestica goldenHordeum vulgare77.1543.1590.96520forward
CNT30399645Malus domestica goldenTriticum turgidum77.1522.7493.85520forward
CNT30562726Malus domestica goldenActinidia chinensis35.0159.4593.22236forward
CNT30554621Malus domestica goldenOryza glaberrima20.9265.5895.74141forward
CNT30444225Malus domestica goldenAegilops tauschii77.1547.193.46520forward
CNT30248027Malus domestica goldenAvena sativa63.3543.8493.68427reverse complement
CNT30668159Malus domestica goldenTriticum dicoccoides74.3370.1791.22501forward
CNT30310298Malus domestica goldenCamelina sativa78.3434.6297.92528reverse complement
CNT3062651Malus domestica goldenArabidopsis lyrata31.7525.7298.13214reverse complement
CNT3082954Malus domestica goldenBrassica juncea29.3816.7891.92198forward
CNT30460907Malus domestica goldenSaccharum spontaneum77.1515.6193.65520forward
CNT30136065Malus domestica goldenLolium perenne74.9378.6693.86505forward
CNT3018333Malus domestica goldenZea mays77.1518.2193.65520forward
CNT30609809Malus domestica goldenGossypium raimondii40.9564.9489.86276forward
CNT30655263Malus domestica goldenRosa chinensis89.6133.4694.37604forward
CNT30208936Malus domestica goldenHelianthus annuus89.7630.0196.36605forward
CNT30126841Malus domestica goldenCorymbia citriodora24.3344.0996.95164forward
CNT30627950Malus domestica goldenDaucus carota63.599.5396.26428forward
CNT30688464Malus domestica goldenTriticum urartu90.0632.9994.07607forward
CNT30722943Malus domestica goldenTriticum spelta90.0630.1593.57607forward
CNT30364730Malus domestica goldenSorghum bicolor56.6867.3794.5382reverse complement
CNT30596725Malus domestica goldenOryza meridionalis77.1515.0793.46520forward
CNT30370808Malus domestica goldenOryza glumipatula20.9264.9896.45141forward
CNT30154922Malus domestica goldenPrunus persica89.6135.7696.69604reverse complement
CNT30411255Malus domestica goldenPapaver somniferum89.7619.9396.53605reverse complement
CNT30705531Malus domestica goldenPrunus avium41.3999.6496.42279reverse complement
CNT30646402Malus domestica goldenCannabis sativa60.2432.0992.61406reverse complement
CNT30319706Malus domestica goldenAsparagus officinalis89.7621.0597.19605forward
CNT30332807Malus domestica goldenDioscorea rotundata75.3730.7597.24508reverse complement
CNT30148090Malus domestica goldenBrachypodium distachyon77.1517.993.85520reverse complement
CNT30102929Malus domestica goldenOryza rufipogon77.634.3691.59523reverse complement
CNT30574740Malus domestica goldenOryza barthii34.7247.5694.44234forward
CNT30585638Malus domestica goldenEchinochloa crusgalli77.1533.5993.65520reverse complement
CNT30604668Malus domestica goldenOryza punctata59.7991.891.32403forward

Expression of CNT30713553

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPYSQEKLERPSTKGYLYPKPTQVGRFLLLLLGCRGLGFRGGGRTRFRL

>peptide 2 (63 aa)
MVIGSRTRGAPDFFRVRRGRENASSQCSSTRRHGAEVTHAILPGKARTTFNKRVPVPETDTGG*

Sequence

>CNT30713553
TAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAAC
GGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTAGAGGGAAGCACCCGCGCGAGCGGCGGTGGACGAAG
CGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGA
GTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCCCGAGGGACGGAGGAGGCTAGGT
TAGCCGAAAGATGGTTATCGGTTCAAGGACGCGGGGTGCCCCTGATTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACC
AGGCGCCACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGT
AGGTTTCTTCTTCTTCTTCTGGGTTGTAGGGGGTTGGGTTTTAGGGGGGGGGGACGAACTAGGTTCCGTCTTGT