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Detailed information on CNT30225309


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 4e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Hordeum vulgareOryza sativa87.841.3395.271058forward
CNT30677056Hordeum vulgareSetaria viridis45.8146.5491.85552forward
CNT30524664Hordeum vulgareSetaria italica65.895894.21794forward
CNT30639555Hordeum vulgareNymphaea colorata67.2247.4291.11810forward
CNT30536068Hordeum vulgareEucalyptus grandis75.2726.3489.31907reverse complement
CNT30513456Hordeum vulgareJuglans regia75.2728.5890.52907forward
CNT30500477Hordeum vulgareCoffea canephora75.2749.8190.63907forward
CNT30616920Hordeum vulgareSesamum indicum42.3252.285.69510reverse complement
CNT30269781Hordeum vulgareChenopodium quinoa75.2730.6989.2907forward
CNT30730500Hordeum vulgareCorchorus capsularis75.2776.4191.51907forward
CNT30630109Hordeum vulgareVigna unguiculata75.2728.7890.85907forward
CNT30196411Hordeum vulgarePisum sativum72.7869.3388.71877forward
CNT30638683Hordeum vulgareCapsicum annuum39.8393.0288.33480reverse complement
CNT3090649Hordeum vulgareSolanum tuberosum75.2733.1790.96907forward
CNT30186247Hordeum vulgareSecale cereale87.874.495.271058forward
CNT30291213Hordeum vulgareTriticum aestivum87.830.4595.461058forward
CNT30400299Hordeum vulgareTriticum turgidum87.849.695.371058forward
CNT30444225Hordeum vulgareAegilops tauschii59.7565.2296.11720forward
CNT30248027Hordeum vulgareAvena sativa67.6383.6893.25815reverse complement
CNT30668159Hordeum vulgareTriticum dicoccoides55.6893.9893.14671forward
CNT30310298Hordeum vulgareCamelina sativa75.2759.4891.29907reverse complement
CNT3062651Hordeum vulgareArabidopsis lyrata49.7972.1291.17600reverse complement
CNT30460907Hordeum vulgareSaccharum spontaneum87.831.7595.461058forward
CNT30136065Hordeum vulgareLolium perenne52.4598.4495.57632forward
CNT3018333Hordeum vulgareZea mays87.837.0695.461058forward
CNT30655263Hordeum vulgareRosa chinensis72.3748.3188.19872forward
CNT30206724Hordeum vulgareHelianthus annuus71.2939.5991.62859forward
CNT30713553Hordeum vulgareMalus domestica golden43.1577.1590.96520forward
CNT30627950Hordeum vulgareDaucus carota31.6288.689.76381forward
CNT30689043Hordeum vulgareTriticum urartu87.852.6195.181058forward
CNT30722943Hordeum vulgareTriticum spelta72.743.5295.09876forward
CNT30364730Hordeum vulgareSorghum bicolor33.1170.3795.74399reverse complement
CNT30596725Hordeum vulgareOryza meridionalis87.8830.6995.371059forward
CNT30154922Hordeum vulgarePrunus persica75.0253.5288.94904reverse complement
CNT30411255Hordeum vulgarePapaver somniferum75.2729.8790.41907reverse complement
CNT30646402Hordeum vulgareCannabis sativa65.8162.6987.52793reverse complement
CNT30319706Hordeum vulgareAsparagus officinalis75.2731.5691.62907forward
CNT30332807Hordeum vulgareDioscorea rotundata74.025491.59892reverse complement
CNT30148090Hordeum vulgareBrachypodium distachyon83.934.895.151011reverse complement
CNT30102929Hordeum vulgareOryza rufipogon75.7759.9993.87913reverse complement
CNT30585638Hordeum vulgareEchinochloa crusgalli60.6647.2296.72731reverse complement
CNT30604668Hordeum vulgareOryza punctata35.6897.9593.49430forward

Expression of CNT30225309

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPYSQEKLERPSTKGYLYPKPTQVGRQETTWRTETS*

>peptide 2 (32 aa)
MSKCIGRGVFLLRGKQPRKRGSTKRKGECRLE*

>peptide 3 (30 aa)
MPRAEVRVPSAAALKYEPHGLAIASLRGSY*

>peptide 4 (44 aa)
MDETKQRSEPTDVEESADEFWLGLKCHSNPELAGSPRNALRHSS*

>peptide 5 (54 aa)
MNGAKRFAVAVGCQNASVGECSSLEGSNRESGGQRSGRENVGLSNENIGENQMP*

Sequence

>CNT30225309
ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCATGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAG
TTCTGGTTAGGGTTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCATAGCAGTTGACTGGAAATCTAGGGGTAAAGCA
CAGTTTTGGTGTGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCGAGTGAGAC
GATGGGGGATAAGGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTGAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTT
GCCTAGAAGCACCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATTTGCCGTAGCTGTGGG
ATGTCAAAATGCATCGGTAGGGGAGTGTTCCTCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCAACGAAGCGGAAGGGAGAATGTCGGCTTGAGTAAC
GAAAACATTGGTGAGAATCAAATGCCCTAAAAACCCAAGGTTTCCTTCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGC
GTAGTCGATGAACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGACGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGG
ACACAAGGTGGCCCTGCTTTTCCAGGGTAATAAGGGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGCTGAAGTATGAGCCCC
ATGGACTAGCAATTGCTTCTCTACGAGGCTCATACTAGGCGCTACGGTGCTGAAGTATGTAACCAATGCCATACTCCCAGGAAAAGCTCGAACGACCTTC
AACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGCAAGAGACAACTTGGCGAACTGAAACATCTTAGTATCCAGAGGAAAAGAAAGCAGAA
GCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGCGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGG
TTGAG