Detailed information on CNT30574740


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 6e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616920Oryza barthiiSesamum indicum54.4727.4388.81268reverse complement
CNT30196674Oryza barthiiPisum sativum56.9125.3692.5280forward
CNT30710098Oryza barthiiGlycine max37.859.2491.94186reverse complement
CNT30638683Oryza barthiiCapsicum annuum58.1355.4387.76286reverse complement
CNT30227123Oryza barthiiHordeum vulgare58.3375.9399.3287forward
CNT30399645Oryza barthiiTriticum turgidum58.3312.5599.3287reverse complement
CNT30444225Oryza barthiiAegilops tauschii56.9125.3699.64280forward
CNT30668159Oryza barthiiTriticum dicoccoides47.5632.7797.44234forward
CNT3082954Oryza barthiiBrassica juncea29.6712.3791.78146forward
CNT30136065Oryza barthiiLolium perenne58.3344.798.61287forward
CNT30609809Oryza barthiiGossypium raimondii36.1841.8888.76178forward
CNT30126841Oryza barthiiCorymbia citriodora43.958.0693.06216forward
CNT30713553Oryza barthiiMalus domestica golden47.5634.7294.44234forward
CNT30623039Oryza barthiiDaucus carota26.2249.2493.02129reverse complement
CNT30363927Oryza barthiiSorghum bicolor58.3371.2298.26287forward
CNT30705531Oryza barthiiPrunus avium20.1235.3690.9199reverse complement
CNT30585638Oryza barthiiEchinochloa crusgalli58.3318.5498.95287reverse complement
CNT30603500Oryza barthiiOryza punctata45.1286.3894.14222forward

Expression of CNT30574740

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNHSHKIYARIFHLGHVKLWVHAWQVPGSPAKAPK*

>peptide 2 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 3 (41 aa)
MLGKCPGHQLRPLNDRSVIKEVGVQRQPGSLPRSSHPLKSA*

>peptide 4 (80 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Sequence

>CNT30574740
CTGATGCAGCCTGAACAGTACATAAAATGAATCATTCCCATAAAATATACGCGAGGATTTTTCATCTCGGTCATGTAAAGCTGTGGGTACATGCTTGGCA
AGTGCCCGGGTCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAAGTTTGCCTAGAAGCAGCCACCC
TTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGG
TAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC