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Detailed information on CNT30646402


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT002444, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Cannabis sativaOryza sativa72.2535.791.25914reverse complement
CNT30677083Cannabis sativaSetaria viridis33.2858.889.31421reverse complement
CNT30524664Cannabis sativaSetaria italica72.1766.6990.58913reverse complement
CNT30639555Cannabis sativaNymphaea colorata86.1763.8291.561090reverse complement
CNT30536068Cannabis sativaEucalyptus grandis86.1731.6591.381090forward
CNT30513456Cannabis sativaJuglans regia86.434.4491.861093reverse complement
CNT30378667Cannabis sativaArabidopsis thaliana22.7725.7495.49288reverse complement
CNT30500477Cannabis sativaCoffea canephora85.9359.6993.011087reverse complement
CNT30616920Cannabis sativaSesamum indicum41.7454.0484.85528forward
CNT30269781Cannabis sativaChenopodium quinoa63.2427.0793.25800reverse complement
CNT30730500Cannabis sativaCorchorus capsularis8085.2693.771012reverse complement
CNT30525072Cannabis sativaPhaseolus vulgaris18.153.6395.63229forward
CNT30630109Cannabis sativaVigna unguiculata84.934.0791.251074reverse complement
CNT30196858Cannabis sativaPisum sativum84.1157.3891064reverse complement
CNT30503431Cannabis sativaNicotiana attenuata61.5856.4194.35779forward
CNT30711335Cannabis sativaGlycine max26.886.4889.97339forward
CNT3044711Cannabis sativaPrunus dulcis36.3696.4493.91460forward
CNT30638683Cannabis sativaCapsicum annuum38.7494.9688.57490forward
CNT3090649Cannabis sativaSolanum tuberosum85.9339.7693.191087reverse complement
CNT30186247Cannabis sativaSecale cereale80.7971.8789.921022reverse complement
CNT30291213Cannabis sativaTriticum aestivum86.831.6189.441098reverse complement
CNT30225309Cannabis sativaHordeum vulgare62.6965.8187.52793reverse complement
CNT30400299Cannabis sativaTriticum turgidum72.2542.8591.14914reverse complement
CNT30588765Cannabis sativaMusa acuminata37.3967.7791.12473forward
CNT3088853Cannabis sativaVigna radiata21.1966.1795.9268forward
CNT30511396Cannabis sativaSolanum lycopersicum24.5833.9994.21311reverse complement
CNT30554009Cannabis sativaOryza glaberrima26.461.2891.32334reverse complement
CNT30441975Cannabis sativaAegilops tauschii48.1476.4190.48609reverse complement
CNT30248027Cannabis sativaAvena sativa72.2593.8489.39914forward
CNT30664460Cannabis sativaTriticum dicoccoides28.5499.7293.63361reverse complement
CNT30310298Cannabis sativaCamelina sativa71.3859.2193.47903forward
CNT30460907Cannabis sativaSaccharum spontaneum86.7232.9289.71097reverse complement
CNT3018333Cannabis sativaZea mays86.7238.4289.71097reverse complement
CNT30655263Cannabis sativaRosa chinensis85.8560.1790.331086reverse complement
CNT30206293Cannabis sativaHelianthus annuus86.0149.5293.21088reverse complement
CNT30713553Cannabis sativaMalus domestica golden32.0960.2492.61406reverse complement
CNT30688464Cannabis sativaTriticum urartu86.859.6789.621098reverse complement
CNT30720907Cannabis sativaTriticum spelta81.11100.4989.671026forward
CNT30596725Cannabis sativaOryza meridionalis86.831.8289.711098reverse complement
CNT30357533Cannabis sativaLactuca sativa33.4441.5594.56423reverse complement
CNT30370808Cannabis sativaOryza glumipatula16.4495.8595.67208reverse complement
CNT30154922Cannabis sativaPrunus persica85.9364.3689.71087forward
CNT30412183Cannabis sativaPapaver somniferum79.9235.993.081011reverse complement
CNT3056240Cannabis sativaAmborella trichopoda19.7687.4194.8250reverse complement
CNT30319706Cannabis sativaAsparagus officinalis86.0937.8991.831089reverse complement
CNT30332807Cannabis sativaDioscorea rotundata86.2566.0491.841091forward
CNT30148090Cannabis sativaBrachypodium distachyon86.837.889.81098forward
CNT30103033Cannabis sativaOryza rufipogon87.1171.0588.111102forward
CNT30576679Cannabis sativaOryza barthii26.1763.0591.84331reverse complement
CNT30585638Cannabis sativaEchinochloa crusgalli40.0832.7590.73507forward

Expression of CNT30646402

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDRSPRFGSISSDDFPMETRFRYSSSGFP*

>peptide 2 (36 aa)
MGVLFTLQRYYFTIYPEYLACKVVLPIHTDSTVPCYS

>peptide 3 (58 aa)
EPCRGTLRFLGNLILTNVCITQADILALNLYHRFRQCFPLGERPPTDAFLHPTPSVIA*

Sequence

>CNT30646402
ACGAACCTTGCAGAGGAACCCTTAGGTTTTTGGGGAATTTGATTCTCACCAATGTTTGCATTACTCAAGCCGACATTCTCGCTTTAAACCTCTACCATCG
CTTTCGGCAGTGCTTCCCTCTAGGCGAACGCCCCCCTACCGATGCATTTTTACATCCCACGCCTTCTGTGATTGCTTAGCCCTGCTCATCTTCTAAACCT
AGCCTCCTCCGCCCCTCCGGGACAAACAAGGGGTAGTACAGAATATTCACCTGTTGTCCATCGACTACGCCTTTTCGGCCGATCTTAGGCCCGGACTCAC
CCTCCGTGGACGAACCTTGCAGAGGAACCCTTAAGTTTTTGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCGCCGACATTCTCGCTTCCCTTCGTC
TACCATCGCCACTAGCGCAGTGCTTCTCTCTAGGCTAACGCCCCCATCGATGCATTTTTACATCCCACAGCTTCGGCAGATTGCTTAGCCCCGTTCATCT
TCGGCACAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTAT
ATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACAATGAAGCTTATCCCCCACCGTCTCACTGGCCGACCTTGACC
CCTGTTATTTTGAGGTCATATCTAGTGTCCGGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCGCGCACCGAAATAGTGCTTTACCCCTAGATTTCCAC
ACAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTTTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGTTGATTCTTCAACA
TCAGTCGGTTCAGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGTAGTGACGATTTCCCTATG
GAGACTCGCTTTCGCTACAGCTCCAGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCAGAGCCCTGG
GCTCCTCCCACTACTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCAACGGTACTACTTCACTATCTACCCA
GAGTATTTAGCCTGCAAGGTGGTCCTGCCGATTCACACAGATTCCACGGTCCCATGCTACTCTGG