« Back to Pisum sativum search


Detailed information on CNT30196411


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Pisum sativumOryza sativa78.8938.9892.79998forward
CNT30677083Pisum sativumSetaria viridis33.4459.0889.36423forward
CNT30524664Pisum sativumSetaria italica72.5767.0691.94918forward
CNT30616920Pisum sativumSesamum indicum41.3453.5386.81523reverse complement
CNT30709956Pisum sativumGlycine max23.7967.0492.03301forward
CNT30638683Pisum sativumCapsicum annuum40.7910090.5516reverse complement
CNT30225309Pisum sativumHordeum vulgare69.3372.7888.71877forward
CNT30400299Pisum sativumTriticum turgidum78.8946.7992.69998forward
CNT30554009Pisum sativumOryza glaberrima26.0960.5592.12330forward
CNT30441975Pisum sativumAegilops tauschii48.8577.5492.56618forward
CNT30248027Pisum sativumAvena sativa73.7595.7991.21933reverse complement
CNT30668159Pisum sativumTriticum dicoccoides38.3467.9390.1485forward
CNT30310298Pisum sativumCamelina sativa79.0565.5794.21000reverse complement
CNT30136065Pisum sativumLolium perenne44.3587.3892.16561forward
CNT30713553Pisum sativumMalus domestica golden48.8591.6991.42618forward
CNT30627950Pisum sativumDaucus carota28.5483.9593.35361forward
CNT30722943Pisum sativumTriticum spelta75.4947.4492.36955forward
CNT30364730Pisum sativumSorghum bicolor30.9969.1491.84392reverse complement
CNT3056240Pisum sativumAmborella trichopoda19.7687.4194.8250forward
CNT30576679Pisum sativumOryza barthii26.463.6292.81334forward
CNT30585638Pisum sativumEchinochloa crusgalli46.6438.1193.22590reverse complement
CNT30604668Pisum sativumOryza punctata30.5988.1589.92387forward

Expression of CNT30196411

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MNGAKRFAEAVGCKNESVGERSALERSTRASRVGRSGSENVGLSNENIGENPMPRKPKDSSARFVHGG*

>peptide 2 (48 aa)
MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPSKSA*

>peptide 3 (45 aa)
MPRAKIRVRVRGTHSGAKVIDAILPGKVQTTYNKRVPVPETDTGG*

>peptide 4 (44 aa)
MPIEPRASWFSPKCVEAQQLTGHLGVKHCFGAGPRRAVPNRGKL*

>peptide 5 (42 aa)
KEPLAGREIEHETVSSQAVGGAGALTACLLKNEPATHRQWLG*

Sequence

>CNT30196411
GAAAAGAACCCCTGGCGGGGAGGGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCTGGGGCTCTGACCGCGTGCCTGTTGAAGAATGA
GCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAAACCACCGGAGCCGTATCGAAAGCGAGTCTTCATAGGGCTATTGTCACTGCTTATGGACCCGAAC
CTGGGTGATCTATCCATGACCAGGATGAAGTTTAGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGTGGATGAGTTGTGGTTAGCG
GTGAAATGCCAATCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGCGC
GGGCCCGCGCAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCGACGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCA
TCGTCGAGAGGGAAACAACCCAGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATAAAGGAGGTAGGAGTGCAGAGACAGCCAGGAGGTTTGCCT
AGAAGCAGCCACCCTTCAAAGAGTGCGTAATAGCTCACTGATCGAGTGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATTTGCCGAAGCTGTGGGATG
TAAAAATGAATCGGTAGGGGAGCGTTCCGCCTTAGAAAGAAGTACCCGCGCGAGCAGGGTTGGACGAAGCGGAAGTGAGAATGTCGGCTTGAGTAACGAA
AACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGATTCCTCCGCAAGGTTCGTCCACGGAGGGTAAGTCAGGACCTAAGATCAGGCCGAAAGGCGTA
GTCGATGGACAACAGGTTAATATTCCTGTACTGCCCCTTGTTGGTCCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGAACA
TAAGGTGACTCCCTGTTTTTTCAGGGTAAGTAAGGGGTAGAGAAAATGCCTCGAGCCAAAATTCGAGTACGAGTACGAGGCACGCACTCTGGCGCTAAAG
TAATTGATGCCATACTCCCAGGAAAAGTTCAAACGACCTACAACAAGAGGGTACCTGTACCGGAAACCGACACAGGTGGGTAGGTAGAAAATACCTAGGG
GCGTGAGACAACTCTCTCTAAGGAACTCGACAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCC