Detailed information on CNT30721122


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001340, E-value = 1e-125

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677056Triticum speltaSetaria viridis80.5455.8293.05662forward
CNT30390228Triticum speltaTriticum turgidum10082.2899.64822forward
CNT30444225Triticum speltaAegilops tauschii99.397498.9817forward
CNT30668159Triticum speltaTriticum dicoccoides86.8610095.94714forward
CNT30136065Triticum speltaLolium perenne76.1697.5197.76626forward
CNT30684661Triticum speltaTriticum urartu98.5419.1499.38810forward
CNT30585638Triticum speltaEchinochloa crusgalli89.7847.6798.78738reverse complement

Expression of CNT30721122

SRR9114152: 35.02 RPKM

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MEGESGPKIRPKGVVDGQQVNIPVLPLVGTEGRRRLG*

>peptide 2 (37 aa)
SPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

>peptide 3 (32 aa)
MSKCIGRGALRLRGKQPQKRGSTKRKRECRLE*

>peptide 4 (35 aa)
MLRAEVRVPSAAALKYEPRGLAIASPRGSYQALRR*

>peptide 5 (68 aa)
MNGAKRSAEAVGCQNASVGGRSALEGSNRKSGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

Sequence

>CNT30721122
CAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCT
TTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGT
AGGGGGGCGCTCCGCCTTAGAGGGAAGCAACCGCAAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAAT
CCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCATGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAG
GTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCT
TTTTCAGGGTAAGAAGGGGTAGAGAAAATGCTTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGCTGAAGTATGAGCCCCGTGGACTAGCGATTGCTT
CTCCACGAGGCTCATACCAGGCGCTACGGCGCTGAAGTATGTAACTGATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTA
CCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGG
GGTGCCCCCTCACAAAAGGGGG