Detailed information on CNT3068134


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 3e-139

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Leersia perrieriSetaria viridis66.375.9592.92240forward
CNT30524664Leersia perrieriSetaria italica91.7124.2593.67332reverse complement
CNT30616920Leersia perrieriSesamum indicum92.8234.3982.74336forward
CNT30196674Leersia perrieriPisum sativum91.7130.0787.95332reverse complement
CNT30503431Leersia perrieriNicotiana attenuata72.3818.9792.37262forward
CNT30708588Leersia perrieriGlycine max41.9967.5692.76152forward
CNT30638683Leersia perrieriCapsicum annuum67.6847.4886.94245forward
CNT30193689Leersia perrieriSecale cereale94.227.5994.43341reverse complement
CNT30227123Leersia perrieriHordeum vulgare81.4978.0493.9295reverse complement
CNT30399645Leersia perrieriTriticum turgidum94.214.9194.43341forward
CNT3088853Leersia perrieriVigna radiata63.2656.5493.45229forward
CNT30510842Leersia perrieriSolanum lycopersicum66.0243.9392.05239reverse complement
CNT30554621Leersia perrieriOryza glaberrima57.4696.7493.27208reverse complement
CNT30441975Leersia perrieriAegilops tauschii94.242.7994.13341reverse complement
CNT30248027Leersia perrieriAvena sativa91.4433.9892.75331forward
CNT30664460Leersia perrieriTriticum dicoccoides83.783.794.72303reverse complement
CNT3062651Leersia perrieriArabidopsis lyrata90.3339.392.05327forward
CNT30136319Leersia perrieriLolium perenne94.259.9394.13341forward
CNT30126841Leersia perrieriCorymbia citriodora90.0687.6389.26326reverse complement
CNT30720907Leersia perrieriTriticum spelta94.233.494.43341forward
CNT30363927Leersia perrieriSorghum bicolor63.5457.0793.04230reverse complement
CNT30370808Leersia perrieriOryza glumipatula57.4695.8593.75208reverse complement
CNT30646476Leersia perrieriCannabis sativa83.1536.6690.03301reverse complement
CNT30102929Leersia perrieriOryza rufipogon92.2721.9494.01334forward
CNT30577320Leersia perrieriOryza barthii57.4647.9393.27208forward
CNT30585638Leersia perrieriEchinochloa crusgalli74.8617.5194.1271forward

Expression of CNT3068134

Peptides detected in this lncRNA

>peptide 1 (71 aa)
FPLGRNAPQPMHFESHSFRRSLSPIHLHRKGARSMSYYALLKGWLLLGKTPGCLCTPPSFITERLFRGLSW*

Sequence

>CNT3068134
TTTCCTCTAGGGCGGAACGCTCCCCAACCAATGCATTTTGAATCCCACAGCTTCCGCAGATCACTTAGCCCCATTCATCTTCACCGCAAGGGCGCTCGAT
CAATGAGCTATTACGCACTCTTGAAAGGGTGGCTGCTTCTAGGCAAAACTCCTGGTTGTCTTTGCACCCCCCCCTCCTTTATCACTGAGCGGTTATTTAG
AGGCCTTAGCTGGTGATCCAGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCATTACCCCTGTTATTTTTGGGTCATA
TCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTTGCGCAGTCCCCGCCCCCACCTCATT