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Detailed information on CNT30332807


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Dioscorea rotundataOryza sativa61.4439.6595.961015reverse complement
CNT30676938Dioscorea rotundataSetaria viridis30.0251.6191.13496reverse complement
CNT30524664Dioscorea rotundataSetaria italica55.5767.0695.53918reverse complement
CNT30639555Dioscorea rotundataNymphaea colorata80.2777.6397.961326reverse complement
CNT30536068Dioscorea rotundataEucalyptus grandis85.1740.8595.951407forward
CNT30513456Dioscorea rotundataJuglans regia85.2944.3996.741409reverse complement
CNT30378667Dioscorea rotundataArabidopsis thaliana17.4325.7498.26288reverse complement
CNT30500477Dioscorea rotundataCoffea canephora85.2377.3297.091408reverse complement
CNT30616920Dioscorea rotundataSesamum indicum31.7253.6390.27524forward
CNT30269781Dioscorea rotundataChenopodium quinoa85.0547.5595.31405reverse complement
CNT30730500Dioscorea rotundataCorchorus capsularis68.5295.3797.441132reverse complement
CNT30630109Dioscorea rotundataVigna unguiculata85.8444.9995.771418reverse complement
CNT30196858Dioscorea rotundataPisum sativum84.2674.9694.181392reverse complement
CNT30503431Dioscorea rotundataNicotiana attenuata60.4172.2797.7998forward
CNT30711335Dioscorea rotundataGlycine max22.4694.6493.53371forward
CNT3044711Dioscorea rotundataPrunus dulcis28.93100.2197.49478forward
CNT30638683Dioscorea rotundataCapsicum annuum31.1799.8193.2515forward
CNT3090649Dioscorea rotundataSolanum tuberosum85.1151.4397.231406reverse complement
CNT30193801Dioscorea rotundataSecale cereale69.7981.6696.181153reverse complement
CNT30291213Dioscorea rotundataTriticum aestivum85.5340.6795.91413reverse complement
CNT30225309Dioscorea rotundataHordeum vulgare5474.0291.59892reverse complement
CNT30400299Dioscorea rotundataTriticum turgidum61.4447.5995.861015reverse complement
CNT30588765Dioscorea rotundataMusa acuminata36.2685.8298.16599forward
CNT3088853Dioscorea rotundataVigna radiata16.1665.9397.75267forward
CNT30511396Dioscorea rotundataSolanum lycopersicum32.0857.9292.26530reverse complement
CNT30554009Dioscorea rotundataOryza glaberrima21.4364.9594.35354reverse complement
CNT30441975Dioscorea rotundataAegilops tauschii37.2977.2995.78616reverse complement
CNT30248027Dioscorea rotundataAvena sativa58.699.3894.11968forward
CNT30668159Dioscorea rotundataTriticum dicoccoides30.2770.0392.2500reverse complement
CNT30310298Dioscorea rotundataCamelina sativa60.6565.797.51002forward
CNT3062651Dioscorea rotundataArabidopsis lyrata41.482.2197.81684forward
CNT30266045Dioscorea rotundataBrassica rapa19.9874.4994.85330reverse complement
CNT30460907Dioscorea rotundataSaccharum spontaneum85.5342.4196.041413reverse complement
CNT30136065Dioscorea rotundataLolium perenne34.9990.0394.64578reverse complement
CNT3018333Dioscorea rotundataZea mays85.5349.4996.041413reverse complement
CNT30655263Dioscorea rotundataRosa chinensis85.1177.8994.11406reverse complement
CNT30206724Dioscorea rotundataHelianthus annuus82.9363.1398.031370reverse complement
CNT30126841Dioscorea rotundataCorymbia citriodora20.8892.7495.36345reverse complement
CNT30713553Dioscorea rotundataMalus domestica golden30.7575.3797.24508reverse complement
CNT30627950Dioscorea rotundataDaucus carota22.1585.1296.45366reverse complement
CNT30688464Dioscorea rotundataTriticum urartu85.5376.7996.041413reverse complement
CNT30720907Dioscorea rotundataTriticum spelta61.810095.891021forward
CNT30596725Dioscorea rotundataOryza meridionalis85.5940.9796.041414reverse complement
CNT30357533Dioscorea rotundataLactuca sativa25.7341.7596.71425reverse complement
CNT30154922Dioscorea rotundataPrunus persica85.1783.394.171407forward
CNT30412251Dioscorea rotundataPapaver somniferum84.4459.3197.631395reverse complement
CNT30646402Dioscorea rotundataCannabis sativa66.0486.2591.841091forward
CNT3056240Dioscorea rotundataAmborella trichopoda15.1387.4198250reverse complement
CNT30319706Dioscorea rotundataAsparagus officinalis85.0548.8999.221405reverse complement
CNT30148090Dioscorea rotundataBrachypodium distachyon85.2948.596.11409forward
CNT30103033Dioscorea rotundataOryza rufipogon85.7791.3694.281417forward
CNT30576679Dioscorea rotundataOryza barthii21.8568.7695.01361reverse complement
CNT30585638Dioscorea rotundataEchinochloa crusgalli36.7439.2195.39607forward
CNT30604668Dioscorea rotundataOryza punctata24.3391.5792.29402reverse complement

Expression of CNT30332807

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDRSPRFGSISSDNRPMKTRFRYGSGGFP*

>peptide 2 (48 aa)
MTFSSHCLGAHGFMFYFTPRWGFFSPFPHGTTSLSVTQEYLALQGGPC*

>peptide 3 (45 aa)
MLLGSERKLVMLSATGLSPSRVQHSTASPSSTTLVLLSHNPVFTV*

>peptide 4 (56 aa)
MFALLKPTFSLPLRPHLLARVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDQ*

>peptide 5 (44 aa)
MGVLFTFPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 6 (41 aa)
MFQFARLTYSGISGSMLIFNSPKHFVACYALPRLWVPRYPP*

>peptide 7 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKLHPGHG*

>peptide 8 (51 aa)
PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGAWYSDIGSRHFLYPFLP*

Sequence

>CNT30332807
CACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT
CGGCGCCTGGTACTCGGACATTGGCTCGAGGCATTTCCTCTACCCCTTCTTACCCTGAAAAAGCAAGGTCACCTTGCGTCCTTGAACCGATAACCATCTT
TCGGCTAACCTAGCCTCCTCCGTCCCTCGTGACCAACAAGGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGG
CCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTC
GCTTCCGCTTCGTCCACACCTGCTTGCGCGGGTGCTTCCCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTTACATCCCACAGCTTCGGCAGATCGC
TTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTG
CACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCA
CTGGTCGACCTTGACCCCTGTTATTCTGGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACCGAAACAGTGCTTT
ACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATC
CGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAG
TGACAATCGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCAC
GCGGTCAGAGATGACATTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGT
ACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGC
GTAAGCTAGTGATGCTTTCGGCTACTGGACTCTCGCCATCTAGGGTGCAGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTCCCACAA
CCCCGTTTTCACGGTTTAGGCTGTTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGC
CAGGTTGACCTATTCGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGG
TATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCATTAACGTTAAGGCTA