Detailed information on CNT30370808


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 7e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Oryza glumipatulaSetaria viridis65.4444.9497.18142reverse complement
CNT30616920Oryza glumipatulaSesamum indicum82.0318.2291.01178reverse complement
CNT30709956Oryza glumipatulaGlycine max47.4722.9495.15103forward
CNT30638683Oryza glumipatulaCapsicum annuum93.0939.1590.59202reverse complement
CNT30193689Oryza glumipatulaSecale cereale95.8516.83100208forward
CNT30227123Oryza glumipatulaHordeum vulgare95.8555.03100208forward
CNT30399645Oryza glumipatulaTriticum turgidum95.859.09100208reverse complement
CNT3088853Oryza glumipatulaVigna radiata59.9132.196.92130reverse complement
CNT30510842Oryza glumipatulaSolanum lycopersicum65.4426.195.77142forward
CNT30554621Oryza glumipatulaOryza glaberrima97.798.699.53212forward
CNT30441550Oryza glumipatulaAegilops tauschii95.8530.3699.52208forward
CNT30664460Oryza glumipatulaTriticum dicoccoides90.3254.1499.49196forward
CNT3062651Oryza glumipatulaArabidopsis lyrata95.852597.6208reverse complement
CNT3082954Oryza glumipatulaBrassica juncea53.929.9290.6117forward
CNT30136319Oryza glumipatulaLolium perenne95.8536.56100208reverse complement
CNT30609809Oryza glumipatulaGossypium raimondii37.7919.2990.2482forward
CNT3068134Oryza glumipatulaLeersia perrieri95.8557.4693.75208reverse complement
CNT30126841Oryza glumipatulaCorymbia citriodora94.0154.8493.63204forward
CNT30713553Oryza glumipatulaMalus domestica golden64.9820.9296.45141forward
CNT30720907Oryza glumipatulaTriticum spelta95.8520.37100208reverse complement
CNT30363927Oryza glumipatulaSorghum bicolor93.5550.37100203forward
CNT30646402Oryza glumipatulaCannabis sativa95.8516.4495.67208reverse complement
CNT30149910Oryza glumipatulaBrachypodium distachyon95.8564.8100208reverse complement
CNT30577320Oryza glumipatulaOryza barthii99.5449.7799.54216reverse complement
CNT30585638Oryza glumipatulaEchinochloa crusgalli95.8513.44100208reverse complement
CNT30603500Oryza glumipatulaOryza punctata60.3750.9797.71131forward
CNT30336936Oryza glumipatulaCynara cardunculus29.956.6196.9265reverse complement

Expression of CNT30370808

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30370808
GCTCTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCC
TAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGAT
GTCAAAATGCATGTGGT