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Detailed information on CNT30102929


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Oryza rufipogonOryza sativa68.7340.8697.711046reverse complement
CNT30524664Oryza rufipogonSetaria italica61.1768.0196.56931reverse complement
CNT30616920Oryza rufipogonSesamum indicum34.4953.7487.05525forward
CNT30638683Oryza rufipogonCapsicum annuum33.7799.6189.88514forward
CNT30225309Oryza rufipogonHordeum vulgare59.9975.7793.87913reverse complement
CNT30400299Oryza rufipogonTriticum turgidum68.7349.0497.611046reverse complement
CNT30441975Oryza rufipogonAegilops tauschii40.6777.6797.42619reverse complement
CNT30248027Oryza rufipogonAvena sativa64.13100.2195.9976forward
CNT30668159Oryza rufipogonTriticum dicoccoides34.5673.6793.54526reverse complement
CNT30310298Oryza rufipogonCamelina sativa67.4167.2893.661026forward
CNT3062651Oryza rufipogonArabidopsis lyrata45.282.6995.06688forward
CNT30142438Oryza rufipogonLolium perenne40.5498.7296.11617reverse complement
CNT3068134Oryza rufipogonLeersia perrieri21.9492.2794.01334forward
CNT30126841Oryza rufipogonCorymbia citriodora22.6792.7492.46345reverse complement
CNT30713553Oryza rufipogonMalus domestica golden34.3677.691.59523reverse complement
CNT30722943Oryza rufipogonTriticum spelta62.9447.5997.6958reverse complement
CNT30364730Oryza rufipogonSorghum bicolor26.2270.3795.99399forward
CNT30585638Oryza rufipogonEchinochloa crusgalli41.2640.5797.77628forward
CNT30604668Oryza rufipogonOryza punctata28.1297.4994.16428reverse complement

Expression of CNT30102929

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SYFSAAALGTRTSARGIFSTPSYPEKAWSPCVLKPITIFRLT*

>peptide 2 (55 aa)
MKTRFRYGSGGFRSLNQATAYESPAHSSIGTRSEITFPSHCLGAQHGFTFYFTTH*

>peptide 3 (54 aa)
MSSQLLCLNAFRGEPASSGFKWHFTPNHNSSADSSTSVGSDLCLVSSKLHPGHG*

>peptide 4 (35 aa)
HTSALQRLVLGPRLEAFSLPLLTLKKHGHLVSLNL*

>peptide 5 (34 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKAERSPTDAF*

>peptide 6 (43 aa)
MFQFARLSLACSWIQQAVQKVDLFGNLRIYAYFQLPKAFRRLLR

>peptide 7 (31 aa)
MDRSPRFGSISSDKLPYEDSLSLRLWWVPFP*

Sequence

>CNT30102929
TCATACTTCAGCGCTGCAGCGCTTGGTACTCGGACCTCGGCTCGAGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAGCATGGTCACCTTGTGTCCTTA
AACCTATAACCATCTTTCGGCTAACCTAGCCTACTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAATATTGACCTGTTGTCCATCGACTACACCTT
TCGGCCTGATCTTAGGCCTTGACTCGCCCTCCGTGGACGAACCTTGCGGAGGAATTCTTGGTGGGTTTTCGGGGCATTGGATTCTCACCCATGTTTTCGT
TACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCC
CACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGTGCAAGGGCGCTTGATCAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCA
AACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAG
CTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTTGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCGTGCAGCC
CGCACCGAAACAGTGCTTTACCCCTAGATGTCTAGTCAACTGCTGTGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCAAGTGGCATTTCA
CCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCA
GGTTCGGGTCCATAAGCAGTGACAAATTGCCCTATGAAGACTCGCTTTCGCTACGGCTCTGGTGGGTTCCGTTCCCTTAACCAAGCCACTGCCTATGAGT
CACCGGCTCATTCTTCAATAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTA
GGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCA
GAGCGTAAGCTAGTGATGCTTTCGGCTACTGAACTTTAGCCATCTAGGGTGCGGCACTCAACCGCTTCACCTAGCAGCACAACGCTTGTATTGCTCTCCC
ACAACCCCGTTTTCACGGTTTAGGCTCCTCCCATTTTGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGT
TCGCCAGGTTGTCTCTTGCCTGCTCATGGATTCAGCAGGCAGTTCAAAAGGTTGACCTATTTGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCAA
AGCATTTCGTCGCTTGCTACGC