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Detailed information on CNT30500477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Coffea canephoraOryza sativa56.4540.1694.751028forward
CNT30677083Coffea canephoraSetaria viridis23.1258.893.35421forward
CNT30524664Coffea canephoraSetaria italica50.366.9194.65916forward
CNT30639555Coffea canephoraNymphaea colorata77.2182.3296.371406forward
CNT30536068Coffea canephoraEucalyptus grandis97.9751.895.461784reverse complement
CNT30513456Coffea canephoraJuglans regia99.6257.1596.471814forward
CNT30378667Coffea canephoraArabidopsis thaliana15.8225.7499.31288forward
CNT30616920Coffea canephoraSesamum indicum28.7853.6391.22524reverse complement
CNT30269781Coffea canephoraChenopodium quinoa99.2961.1894.691808forward
CNT30730500Coffea canephoraCorchorus capsularis64.5298.9998.041175forward
CNT30630109Coffea canephoraVigna unguiculata100.0557.895.831822forward
CNT30196858Coffea canephoraPisum sativum80.1878.6294.041460forward
CNT30503447Coffea canephoraNicotiana attenuata59.0964.3299.071076reverse complement
CNT30711335Coffea canephoraGlycine max20.3794.6495.15371reverse complement
CNT3044711Coffea canephoraPrunus dulcis26.1910099.37477reverse complement
CNT30638683Coffea canephoraCapsicum annuum28.3410093.02516reverse complement
CNT3090649Coffea canephoraSolanum tuberosum100.1166.6898.131823forward
CNT30193801Coffea canephoraSecale cereale67.8287.4694.661235forward
CNT30291213Coffea canephoraTriticum aestivum82.9243.4794.111510forward
CNT30225309Coffea canephoraHordeum vulgare49.8175.2790.63907forward
CNT30400299Coffea canephoraTriticum turgidum56.4548.294.651028forward
CNT30588765Coffea canephoraMusa acuminata32.8985.8296.33599reverse complement
CNT3088853Coffea canephoraVigna radiata14.6665.9398.88267reverse complement
CNT30511396Coffea canephoraSolanum lycopersicum33.2266.1294.71605forward
CNT30554009Coffea canephoraOryza glaberrima18.3461.2894.61334forward
CNT30441975Coffea canephoraAegilops tauschii33.8377.2994.48616forward
CNT30248027Coffea canephoraAvena sativa51.1395.5993.34931reverse complement
CNT30664460Coffea canephoraTriticum dicoccoides19.8299.7297.23361forward
CNT30310298Coffea canephoraCamelina sativa56.1267.0297.461022reverse complement
CNT3062651Coffea canephoraArabidopsis lyrata37.5682.2198.25684reverse complement
CNT30460907Coffea canephoraSaccharum spontaneum82.9245.3294.171510forward
CNT30142438Coffea canephoraLolium perenne33.6698.0892.01613forward
CNT3018333Coffea canephoraZea mays78.9150.3394.571437forward
CNT30655263Coffea canephoraRosa chinensis86.9987.7693.121584forward
CNT30206724Coffea canephoraHelianthus annuus79.6866.8798.351451forward
CNT30126841Coffea canephoraCorymbia citriodora18.9592.7496.52345forward
CNT30713553Coffea canephoraMalus domestica golden33.2289.7695.54605forward
CNT30627950Coffea canephoraDaucus carota22.6295.8195.39412forward
CNT30688464Coffea canephoraTriticum urartu91.3290.3894.111663forward
CNT30722943Coffea canephoraTriticum spelta72.1665.2894.061314forward
CNT30363927Coffea canephoraSorghum bicolor19.6688.8394.13358forward
CNT30596725Coffea canephoraOryza meridionalis82.9843.7894.181511forward
CNT30154922Coffea canephoraPrunus persica88.8595.893.821618reverse complement
CNT30410430Coffea canephoraPapaver somniferum81.8851.5496.511491reverse complement
CNT30646402Coffea canephoraCannabis sativa59.6985.9393.011087reverse complement
CNT3056240Coffea canephoraAmborella trichopoda13.7387.4198.4250forward
CNT30319706Coffea canephoraAsparagus officinalis100.1663.4796.61824forward
CNT30332807Coffea canephoraDioscorea rotundata77.3285.2397.091408reverse complement
CNT30148090Coffea canephoraBrachypodium distachyon78.3149.0994.61426reverse complement
CNT30103033Coffea canephoraOryza rufipogon83.1497.6192.61514reverse complement
CNT30576679Coffea canephoraOryza barthii18.3463.6295.51334forward
CNT30585638Coffea canephoraEchinochloa crusgalli34.1640.1893.57622reverse complement
CNT30604668Coffea canephoraOryza punctata22.0891.5789.8402forward

Expression of CNT30500477

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVKVGQ*

>peptide 2 (68 aa)
MNGAKRSAEAVGCKNTSVGERSALERSLRASSGGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGG*

>peptide 3 (44 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP*

>peptide 4 (45 aa)
KISISGDSRIGQPFKLLLNPWAVKRQPGELKHLSSQRKRKQKRFP*

>peptide 5 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

>peptide 6 (33 aa)
ENKHIRRFPNRATFQTTAESMGSQETTWRTETS*

Sequence

>CNT30500477
TGAAAATAAGCATATCCGGAGATTCCCGAATAGGGCAACCTTTCAAACTACTGCTGAATCCATGGGCAGTCAAGAGACAACCTGGCGAACTGAAACATCT
TAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATA
CAAGTGTCGTGCTGCTAGGCGAAGCAGCCCGAATGCTGCACCCTAGATGGCGAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTA
GCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAGGG
TGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTCTGACCGCGTGCCTGTTGAAGAAT
GAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGA
ACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAG
GGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGT
GCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGAT
AAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAG
GTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCT
GTGGGATGTAAAAATACATCGGTAGGGGAGCGTTCCGCCTTAGAGAGAAGCCTCCGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGA
GTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGA
AAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCGTTTGTTAGTCTCGAGGGACGGAGGAAGCTAGGTTAACCGAAAGATGGTTATCGGTT
CAAGAACGTAAGGTGCCCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACC
CACGCCATACTCCCAGGAAAAGCTCGAAGGGCTGTAAACAAAAAGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCG
AGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACT
GTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCAAAAGGTCAAAGAAGTTGGTGACCTGATAAC
AGGGAAGTCGGCAACCGAAGC